Variant report

Variant	rs28868985
Chromosome Location	chr16:70653280-70653281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11075774	0.83[AMR][1000 genomes]
rs12102525	0.83[AMR][1000 genomes]
rs13335470	0.83[AMR][1000 genomes]
rs13338169	0.83[AMR][1000 genomes]
rs1902563	0.83[AMR][1000 genomes]
rs28780486	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59710171	0.83[AMR][1000 genomes]
rs60020150	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60337219	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60774382	0.83[AMR][1000 genomes]
rs73575026	0.83[AMR][1000 genomes]
rs8063038	0.83[AMR][1000 genomes]
rs8064220	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv14380	chr16:70650573-70660117	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70645200-70653400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:70645400-70655000	Weak transcription	Placenta	Placenta
3	chr16:70647400-70669200	Weak transcription	Right Atrium	heart
4	chr16:70647800-70664800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr16:70648800-70654600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr16:70652400-70656800	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr16:70652600-70653400	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
8	chr16:70652600-70655400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr16:70652800-70654600	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr16:70652800-70655600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr16:70652800-70656000	Active TSS	H1 Cell Line	embryonic stem cell
12	chr16:70652800-70656000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr16:70653000-70654400	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr16:70653000-70654600	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr16:70653000-70655800	Active TSS	H9 Cell Line	embryonic stem cell
16	chr16:70653200-70654600	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr16:70653200-70656000	Active TSS	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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