Variant report

Variant	rs2887990
Chromosome Location	chr3:28197021-28197022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:28196891..28198936-chr3:28200402..28202674,2	K562	blood:

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs11715697	0.99[ASN][1000 genomes]
rs11719949	1.00[ASN][1000 genomes]
rs11921121	1.00[ASN][1000 genomes]
rs13063970	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13074476	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075100	0.93[ASN][1000 genomes]
rs13094235	1.00[ASN][1000 genomes]
rs1353041	1.00[ASN][1000 genomes]
rs1389147	1.00[ASN][1000 genomes]
rs1395409	0.97[ASN][1000 genomes]
rs1395410	0.97[ASN][1000 genomes]
rs1493090	0.88[JPT][hapmap]
rs1493095	1.00[ASN][1000 genomes]
rs17021124	0.86[ASN][1000 genomes]
rs17021141	1.00[ASN][1000 genomes]
rs1873832	0.96[ASN][1000 genomes]
rs1873833	0.96[ASN][1000 genomes]
rs1873838	0.97[ASN][1000 genomes]
rs1994831	1.00[ASN][1000 genomes]
rs2220743	0.97[ASN][1000 genomes]
rs2371259	0.97[ASN][1000 genomes]
rs2887991	0.97[ASN][1000 genomes]
rs2933569	0.91[ASN][1000 genomes]
rs2968492	0.96[ASN][1000 genomes]
rs338605	0.97[ASN][1000 genomes]
rs338620	0.96[ASN][1000 genomes]
rs338621	0.96[ASN][1000 genomes]
rs34140300	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34997446	0.97[ASN][1000 genomes]
rs35020864	1.00[ASN][1000 genomes]
rs35084823	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35215207	1.00[ASN][1000 genomes]
rs35289695	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35324234	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35390622	0.97[ASN][1000 genomes]
rs35813384	1.00[ASN][1000 genomes]
rs368524	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs380560	0.97[ASN][1000 genomes]
rs384620	0.97[ASN][1000 genomes]
rs387121	0.97[ASN][1000 genomes]
rs392923	0.97[ASN][1000 genomes]
rs401387	0.97[ASN][1000 genomes]
rs402381	0.97[ASN][1000 genomes]
rs403421	0.97[ASN][1000 genomes]
rs403633	0.97[ASN][1000 genomes]
rs406405	0.97[ASN][1000 genomes]
rs410370	0.97[ASN][1000 genomes]
rs428094	0.97[ASN][1000 genomes]
rs4289311	0.97[ASN][1000 genomes]
rs436374	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4384917	0.97[ASN][1000 genomes]
rs440254	0.97[ASN][1000 genomes]
rs440762	0.89[ASN][1000 genomes]
rs441008	0.97[ASN][1000 genomes]
rs4497991	0.97[ASN][1000 genomes]
rs452167	0.93[ASN][1000 genomes]
rs453627	0.97[ASN][1000 genomes]
rs4560253	0.97[ASN][1000 genomes]
rs4632507	0.96[ASN][1000 genomes]
rs58657037	0.97[ASN][1000 genomes]
rs598274	0.97[ASN][1000 genomes]
rs615617	0.97[ASN][1000 genomes]
rs635629	0.97[ASN][1000 genomes]
rs647616	0.97[ASN][1000 genomes]
rs6551244	0.97[ASN][1000 genomes]
rs67423405	1.00[ASN][1000 genomes]
rs6764680	0.97[ASN][1000 genomes]
rs6794352	0.96[ASN][1000 genomes]
rs6804541	0.97[ASN][1000 genomes]
rs6806119	1.00[ASN][1000 genomes]
rs7427073	1.00[ASN][1000 genomes]
rs7636966	1.00[ASN][1000 genomes]
rs7638061	0.88[ASN][1000 genomes]
rs7646845	1.00[ASN][1000 genomes]
rs7651818	0.97[ASN][1000 genomes]
rs9814632	1.00[ASN][1000 genomes]
rs9815005	1.00[ASN][1000 genomes]
rs9815651	0.93[ASN][1000 genomes]
rs9815837	0.90[ASN][1000 genomes]
rs9816145	0.97[ASN][1000 genomes]
rs9820642	1.00[ASN][1000 genomes]
rs9853308	0.95[ASN][1000 genomes]
rs9862850	1.00[ASN][1000 genomes]
rs9873249	0.93[ASN][1000 genomes]
rs9942105	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876648	chr3:28060456-28280965	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv508214	chr3:28157554-28198530	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv230	chr3:28183919-28198991	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv3745	chr3:28183919-28198991	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv435751	chr3:28185421-28197849	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	esv1830512	chr3:28186184-28197089	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	esv1832594	chr3:28186184-28197089	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
10	nsv998842	chr3:28186707-28199663	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
11	esv21351	chr3:28187000-28197678	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
12	nsv498996	chr3:28187059-28197758	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
13	esv1826287	chr3:28187902-28198822	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
14	esv1825427	chr3:28188538-28197289	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
15	esv1830590	chr3:28188538-28197289	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
16	esv1829512	chr3:28188738-28197089	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
17	esv1832411	chr3:28188738-28197089	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
18	esv1829932	chr3:28191703-28197450	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
19	esv1828286	chr3:28191703-28197560	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
20	esv1829031	chr3:28191703-28197560	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
21	esv1832853	chr3:28191703-28197560	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
22	esv1830878	chr3:28191703-28201121	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
23	esv1828487	chr3:28191703-28204584	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
24	esv1830098	chr3:28193856-28197560	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
25	esv1830246	chr3:28193856-28197560	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
26	esv1830475	chr3:28193856-28197560	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
27	esv1831237	chr3:28193856-28197560	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
28	esv1831923	chr3:28193856-28197560	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
29	esv1826879	chr3:28193856-28204584	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
30	esv1829709	chr3:28193856-28204584	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
31	esv1831111	chr3:28193856-28204584	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
32	esv1831925	chr3:28193856-28204584	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
33	esv1833322	chr3:28193856-28204584	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
34	esv1825353	chr3:28193856-28206877	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
35	esv1828457	chr3:28193856-28207763	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
36	esv1830913	chr3:28193856-28207763	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28196600-28197200	Enhancers	Fetal Brain Female	brain
2	chr3:28196800-28198200	Enhancers	Fetal Brain Male	brain

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