Variant report
Variant | rs35289695 |
---|---|
Chromosome Location | chr3:28176924-28176925 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:28172706..28175073-chr3:28175092..28177217,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11715697 | 0.99[ASN][1000 genomes] |
rs11719949 | 1.00[ASN][1000 genomes] |
rs11921121 | 1.00[ASN][1000 genomes] |
rs13063970 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13074476 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13075100 | 0.93[ASN][1000 genomes] |
rs13094235 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1353041 | 1.00[ASN][1000 genomes] |
rs1389147 | 1.00[ASN][1000 genomes] |
rs1395409 | 0.97[ASN][1000 genomes] |
rs1395410 | 0.97[ASN][1000 genomes] |
rs1493095 | 1.00[ASN][1000 genomes] |
rs17021124 | 0.86[ASN][1000 genomes] |
rs17021141 | 1.00[ASN][1000 genomes] |
rs1873832 | 0.96[ASN][1000 genomes] |
rs1873833 | 0.96[ASN][1000 genomes] |
rs1873838 | 0.97[ASN][1000 genomes] |
rs1994831 | 1.00[ASN][1000 genomes] |
rs2220743 | 0.97[ASN][1000 genomes] |
rs2371259 | 0.97[ASN][1000 genomes] |
rs2887990 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2887991 | 0.97[ASN][1000 genomes] |
rs2933569 | 0.91[ASN][1000 genomes] |
rs2968492 | 0.96[ASN][1000 genomes] |
rs338605 | 0.97[ASN][1000 genomes] |
rs338620 | 0.96[ASN][1000 genomes] |
rs338621 | 0.96[ASN][1000 genomes] |
rs34140300 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34997446 | 0.97[ASN][1000 genomes] |
rs35020864 | 1.00[ASN][1000 genomes] |
rs35084823 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs35215207 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35324234 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs35390622 | 0.97[ASN][1000 genomes] |
rs35813384 | 1.00[ASN][1000 genomes] |
rs368524 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs380560 | 0.97[ASN][1000 genomes] |
rs384620 | 0.97[ASN][1000 genomes] |
rs387121 | 0.97[ASN][1000 genomes] |
rs392923 | 0.97[ASN][1000 genomes] |
rs401387 | 0.97[ASN][1000 genomes] |
rs402381 | 0.97[ASN][1000 genomes] |
rs403421 | 0.97[ASN][1000 genomes] |
rs403633 | 0.97[ASN][1000 genomes] |
rs406405 | 0.97[ASN][1000 genomes] |
rs410370 | 0.97[ASN][1000 genomes] |
rs428094 | 0.97[ASN][1000 genomes] |
rs4289311 | 0.97[ASN][1000 genomes] |
rs436374 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4384917 | 0.97[ASN][1000 genomes] |
rs440254 | 0.97[ASN][1000 genomes] |
rs440762 | 0.89[ASN][1000 genomes] |
rs441008 | 0.97[ASN][1000 genomes] |
rs4497991 | 0.97[ASN][1000 genomes] |
rs452167 | 0.93[ASN][1000 genomes] |
rs453627 | 0.97[ASN][1000 genomes] |
rs4560253 | 0.97[ASN][1000 genomes] |
rs4632507 | 0.96[ASN][1000 genomes] |
rs58657037 | 0.97[ASN][1000 genomes] |
rs598274 | 0.97[ASN][1000 genomes] |
rs615617 | 0.97[ASN][1000 genomes] |
rs635629 | 0.97[ASN][1000 genomes] |
rs647616 | 0.97[ASN][1000 genomes] |
rs6551244 | 0.97[ASN][1000 genomes] |
rs67423405 | 1.00[ASN][1000 genomes] |
rs6764680 | 0.97[ASN][1000 genomes] |
rs6794352 | 0.96[ASN][1000 genomes] |
rs6804541 | 0.97[ASN][1000 genomes] |
rs6806119 | 1.00[ASN][1000 genomes] |
rs7427073 | 1.00[ASN][1000 genomes] |
rs7636966 | 1.00[ASN][1000 genomes] |
rs7638061 | 0.88[ASN][1000 genomes] |
rs7646845 | 1.00[ASN][1000 genomes] |
rs7651818 | 0.97[ASN][1000 genomes] |
rs9814632 | 1.00[ASN][1000 genomes] |
rs9815005 | 1.00[ASN][1000 genomes] |
rs9815651 | 0.93[ASN][1000 genomes] |
rs9815837 | 0.90[ASN][1000 genomes] |
rs9816145 | 0.97[ASN][1000 genomes] |
rs9820642 | 1.00[ASN][1000 genomes] |
rs9853308 | 0.95[ASN][1000 genomes] |
rs9862850 | 1.00[ASN][1000 genomes] |
rs9873249 | 0.93[ASN][1000 genomes] |
rs9942105 | 0.97[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3328565 | chr3:27991169-28915035 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
2 | nsv876648 | chr3:28060456-28280965 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv876649 | chr3:28126595-28718454 | Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
4 | nsv508214 | chr3:28157554-28198530 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:28175800-28177400 | Enhancers | HepG2 | liver |
2 | chr3:28176200-28177400 | Enhancers | Rectal Mucosa Donor 31 | rectum |
3 | chr3:28176200-28177600 | Enhancers | Rectal Mucosa Donor 29 | rectum |
4 | chr3:28176400-28177000 | Enhancers | Small Intestine | intestine |
5 | chr3:28176600-28181200 | Weak transcription | Fetal Intestine Small | intestine |
6 | chr3:28176800-28177000 | Enhancers | Sigmoid Colon | Sigmoid Colon |
7 | chr3:28176800-28180800 | Weak transcription | Pancreas | Pancrea |