Variant report

Variant	rs28881289
Chromosome Location	chr15:31223955-31223956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31223541..31225627-chr15:31225836..31228644,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10163148	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12907055	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1404467	0.85[ASN][1000 genomes]
rs1474381	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1474382	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2140735	0.87[ASN][1000 genomes]
rs2293319	0.98[ASN][1000 genomes]
rs2293320	0.97[ASN][1000 genomes]
rs2339048	0.97[ASN][1000 genomes]
rs28693590	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2873	0.85[ASN][1000 genomes]
rs2949567	0.85[ASN][1000 genomes]
rs2949572	0.87[ASN][1000 genomes]
rs2955791	0.85[ASN][1000 genomes]
rs2955794	0.80[ASN][1000 genomes]
rs2955795	0.85[ASN][1000 genomes]
rs35162264	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35497908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794596	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4779796	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4779797	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7169064	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7176351	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7178375	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7178533	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9806159	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427955	chr15:30467980-31273174	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv916936	chr15:30921917-31337510	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv525795	chr15:30936285-31324531	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv533434	chr15:30938215-31244225	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
7	nsv1046874	chr15:31008133-31294654	Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
9	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
10	nsv832951	chr15:31131239-31304469	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv1039037	chr15:31140415-31277268	Strong transcription ZNF genes & repeats Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
12	nsv542309	chr15:31140415-31277268	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
13	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
14	nsv521842	chr15:31140700-31272670	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
15	nsv903834	chr15:31179534-31293774	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	esv33507	chr15:31183324-31471023	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
17	nsv832952	chr15:31204426-31333998	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28881289	MTMR15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31198200-31224000	Strong transcription	Dnd41	blood
2	chr15:31200200-31224000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:31200400-31242200	Strong transcription	Primary T cells from cord blood	blood
4	chr15:31200600-31254800	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr15:31201200-31224000	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr15:31201200-31241400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:31204200-31224000	Strong transcription	Stomach Smooth Muscle	stomach
8	chr15:31204400-31224000	Strong transcription	Duodenum Mucosa	Duodenum
9	chr15:31204600-31224000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr15:31205000-31224000	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr15:31208400-31224000	Strong transcription	Duodenum Smooth Muscle	Duodenum
12	chr15:31209000-31224000	Strong transcription	Ovary	ovary
13	chr15:31212200-31224000	Strong transcription	Fetal Intestine Large	intestine
14	chr15:31212200-31224000	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:31212800-31224000	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr15:31213600-31224000	Strong transcription	Fetal Lung	lung
17	chr15:31214000-31224200	Strong transcription	A549	lung
18	chr15:31214200-31224000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:31214400-31224000	Strong transcription	Liver	Liver
20	chr15:31214800-31230600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr15:31215200-31238600	Weak transcription	Fetal Heart	heart
22	chr15:31215200-31241000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:31215800-31236600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr15:31216000-31241600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr15:31216200-31224000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:31216400-31224000	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr15:31216400-31224000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr15:31216600-31224000	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr15:31216600-31224000	Strong transcription	Muscle Satellite Cultured Cells	--
30	chr15:31216600-31224800	Weak transcription	Right Atrium	heart
31	chr15:31216600-31225000	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr15:31216600-31245800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:31216800-31224000	Strong transcription	H9 Cell Line	embryonic stem cell
34	chr15:31216800-31224000	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr15:31216800-31224000	Strong transcription	Skeletal Muscle Male	skeletal muscle
36	chr15:31217000-31224000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr15:31217200-31224000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr15:31217200-31224000	Strong transcription	Osteobl	bone
39	chr15:31217200-31224200	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr15:31217200-31224800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr15:31217400-31224000	Strong transcription	Brain Angular Gyrus	brain
42	chr15:31217600-31224200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr15:31217800-31228600	Weak transcription	Fetal Kidney	kidney
44	chr15:31218000-31224000	Strong transcription	Brain Anterior Caudate	brain
45	chr15:31218200-31224000	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr15:31218200-31228400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr15:31220000-31228800	Weak transcription	HSMM	muscle
48	chr15:31220000-31233800	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr15:31220200-31226800	Weak transcription	Primary hematopoietic stem cells	blood
50	chr15:31221000-31224000	Strong transcription	NH-A	brain

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