Variant report

Variant	rs35162264
Chromosome Location	chr15:31200683-31200684
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:31198827..31201820-chr15:31205721..31207628,2	K562	blood:
2	chr15:31200156..31201830-chr15:31207091..31209747,2	MCF-7	breast:
3	chr15:31199252..31201073-chr15:31208786..31211235,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10163148	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631543	0.80[ASN][1000 genomes]
rs12441318	0.80[ASN][1000 genomes]
rs12907055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1474381	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1474382	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880500	0.80[ASN][1000 genomes]
rs2293314	0.80[ASN][1000 genomes]
rs2293319	0.82[ASN][1000 genomes]
rs2293320	0.80[ASN][1000 genomes]
rs2339048	0.80[ASN][1000 genomes]
rs28548813	0.80[ASN][1000 genomes]
rs28693590	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28708881	0.80[ASN][1000 genomes]
rs28721380	0.80[ASN][1000 genomes]
rs28881289	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2949566	0.80[ASN][1000 genomes]
rs2955796	0.80[ASN][1000 genomes]
rs2955798	0.80[ASN][1000 genomes]
rs2959039	0.80[ASN][1000 genomes]
rs35497908	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4779796	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4779797	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167980	0.82[ASN][1000 genomes]
rs7169064	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176351	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7178375	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7178533	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9806159	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427955	chr15:30467980-31273174	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv916936	chr15:30921917-31337510	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv525795	chr15:30936285-31324531	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv533434	chr15:30938215-31244225	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
7	nsv1046874	chr15:31008133-31294654	Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
9	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
10	nsv832951	chr15:31131239-31304469	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv1039037	chr15:31140415-31277268	Strong transcription ZNF genes & repeats Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
12	nsv542309	chr15:31140415-31277268	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
13	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
14	nsv521842	chr15:31140700-31272670	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
15	nsv903834	chr15:31179534-31293774	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	esv33507	chr15:31183324-31471023	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs35162264	MTMR15	Cis_1M	lymphoblastoid	RTeQTL
rs35162264	RP11-932O9.7	cis	Muscle Skeletal	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31196600-31200800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:31196600-31201400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:31196600-31201400	Weak transcription	Small Intestine	intestine
4	chr15:31196600-31201600	Weak transcription	Gastric	stomach
5	chr15:31196600-31210800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:31196800-31201000	Weak transcription	Ovary	ovary
7	chr15:31196800-31201200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:31196800-31201200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr15:31196800-31201200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr15:31196800-31201400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr15:31196800-31201400	Weak transcription	Lung	lung
12	chr15:31196800-31201600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:31196800-31201600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:31196800-31201600	Weak transcription	Aorta	Aorta
15	chr15:31196800-31201600	Weak transcription	Fetal Intestine Small	intestine
16	chr15:31196800-31201600	Weak transcription	Right Ventricle	heart
17	chr15:31196800-31202800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr15:31196800-31210400	Weak transcription	HSMMtube	muscle
19	chr15:31196800-31213000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:31196800-31215000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr15:31197000-31200800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr15:31197000-31200800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr15:31197000-31200800	Weak transcription	Fetal Intestine Large	intestine
24	chr15:31197000-31201000	Weak transcription	Osteobl	bone
25	chr15:31197000-31201200	Weak transcription	Hela-S3	cervix
26	chr15:31197000-31201200	Weak transcription	NHDF-Ad	bronchial
27	chr15:31197000-31201400	Weak transcription	NHLF	lung
28	chr15:31197000-31201600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:31197000-31201600	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr15:31197000-31201600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr15:31197000-31201800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr15:31197000-31206200	Weak transcription	NH-A	brain
33	chr15:31197000-31210600	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr15:31197000-31213400	Weak transcription	Stomach Mucosa	stomach
35	chr15:31197000-31216400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:31197200-31201000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr15:31197200-31201200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr15:31197200-31201200	Weak transcription	Primary B cells from cord blood	blood
39	chr15:31197200-31201200	Weak transcription	Fetal Lung	lung
40	chr15:31197200-31201200	Weak transcription	HUVEC	blood vessel
41	chr15:31197200-31201400	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr15:31197200-31201400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr15:31197200-31201400	Weak transcription	Colonic Mucosa	Colon
44	chr15:31197200-31202400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr15:31197200-31204600	Weak transcription	Primary hematopoietic stem cells	blood
46	chr15:31197200-31214000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:31197400-31201200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr15:31197400-31201200	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr15:31197400-31201200	Weak transcription	Adipose Nuclei	Adipose
50	chr15:31197400-31201400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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