Variant report

Variant	rs28883924
Chromosome Location	chr15:59923806-59923807
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59815837..59817433-chr15:59923383..59925258,2	K562	blood:
2	chr15:59922295..59925981-chr15:59927232..59929726,3	K562	blood:
3	chr15:59923114..59927076-chr15:59929959..59933582,4	K562	blood:
4	chr15:59923114..59927076-chr15:59930243..59933582,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12050786	0.90[EUR][1000 genomes]
rs12161947	0.84[EUR][1000 genomes]
rs12161992	0.84[EUR][1000 genomes]
rs12161993	0.84[EUR][1000 genomes]
rs16941544	0.92[ASN][1000 genomes]
rs17236713	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17236734	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17302448	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17302608	0.90[EUR][1000 genomes]
rs28395445	0.90[EUR][1000 genomes]
rs28418513	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28422085	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28437066	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28642859	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28654927	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2899650	0.84[EUR][1000 genomes]
rs4775192	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4775193	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4775198	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6151443	0.84[EUR][1000 genomes]
rs6151522	0.90[EUR][1000 genomes]
rs6151534	0.90[EUR][1000 genomes]
rs6151538	0.90[EUR][1000 genomes]
rs6151540	0.90[EUR][1000 genomes]
rs6151567	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6151575	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6151591	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7178008	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8027421	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8033208	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8033718	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv569605	chr15:59855226-59956553	Strong transcription Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv533240	chr15:59858093-59998176	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	esv1824522	chr15:59919844-59987181	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59905200-59931600	Weak transcription	Fetal Stomach	stomach
2	chr15:59905200-59946200	Weak transcription	Gastric	stomach
3	chr15:59909000-59930200	Weak transcription	Fetal Intestine Large	intestine
4	chr15:59911400-59929800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr15:59912000-59932600	Weak transcription	Colonic Mucosa	Colon
6	chr15:59912200-59928400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr15:59912200-59935000	Weak transcription	Fetal Intestine Small	intestine
8	chr15:59914800-59937800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:59917800-59927800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:59917800-59930200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr15:59919800-59928200	Weak transcription	HSMMtube	muscle
12	chr15:59920600-59928600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr15:59920600-59947000	Weak transcription	Small Intestine	intestine
14	chr15:59922200-59929800	Weak transcription	GM12878-XiMat	blood
15	chr15:59922600-59928000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:59922800-59924800	Weak transcription	A549	lung
17	chr15:59922800-59925000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr15:59923000-59930200	Weak transcription	Osteobl	bone

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