Variant report

Variant	rs6151567
Chromosome Location	chr15:59960798-59960799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59958616..59963871-chr15:59968752..59974672,6	K562	blood:

Variant related genes	Relation type
ENSG00000140299	Chromatin interaction
ENSG00000259657	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12050786	0.80[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12161993	0.82[JPT][hapmap]
rs16941544	0.93[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17236713	0.87[CHB][hapmap];0.89[JPT][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17236734	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17302448	0.87[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17302608	0.83[JPT][hapmap];0.85[EUR][1000 genomes]
rs28395445	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs28418513	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28422085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28437066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28642859	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28654927	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28883924	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4775192	0.86[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4775193	0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4775198	0.95[EUR][1000 genomes]
rs6151443	0.83[JPT][hapmap]
rs6151457	0.95[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6151492	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6151497	1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6151505	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6151522	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6151534	0.80[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes]
rs6151538	0.95[EUR][1000 genomes]
rs6151540	0.95[EUR][1000 genomes]
rs6151575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6151591	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7178008	0.84[EUR][1000 genomes]
rs8027421	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8033208	0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8033718	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv533240	chr15:59858093-59998176	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv1824522	chr15:59919844-59987181	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1043693	chr15:59944471-59971500	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59949800-59963400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:59949800-59964000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:59949800-59968000	Weak transcription	Stomach Mucosa	stomach
4	chr15:59949800-59968400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:59949800-59980000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:59950000-59963200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:59950200-59961200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:59950200-59963400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:59950200-59963400	Weak transcription	Brain Angular Gyrus	brain
10	chr15:59950200-59963400	Weak transcription	Ovary	ovary
11	chr15:59950200-59964000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:59950200-59964000	Weak transcription	Gastric	stomach
13	chr15:59950200-59964000	Weak transcription	Lung	lung
14	chr15:59950200-59964000	Weak transcription	Small Intestine	intestine
15	chr15:59950200-59967800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:59950200-59968400	Weak transcription	Right Ventricle	heart
17	chr15:59950200-59968800	Weak transcription	Aorta	Aorta
18	chr15:59950400-59964000	Weak transcription	Pancreas	Pancrea
19	chr15:59950400-59964000	Weak transcription	Psoas Muscle	Psoas
20	chr15:59950400-59965600	Weak transcription	Brain Substantia Nigra	brain
21	chr15:59950400-59968800	Weak transcription	Esophagus	oesophagus
22	chr15:59950400-59979600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:59950800-59961600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr15:59951000-59978400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:59951400-59964600	Strong transcription	HUVEC	blood vessel
26	chr15:59951400-59965400	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr15:59951400-59972600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr15:59951400-59973600	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr15:59951400-59973600	Strong transcription	HSMM	muscle
30	chr15:59951400-59975000	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr15:59951400-59975200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr15:59951400-59975400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr15:59951400-59976000	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr15:59951400-59978800	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr15:59951600-59976400	Strong transcription	Duodenum Mucosa	Duodenum
36	chr15:59951800-59975000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr15:59951800-59975600	Strong transcription	Primary B cells from cord blood	blood
38	chr15:59952000-59975600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:59952000-59976600	Strong transcription	Primary B cells from peripheral blood	blood
40	chr15:59952000-59977800	Strong transcription	Hela-S3	cervix
41	chr15:59952200-59969800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:59952200-59974800	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr15:59952200-59974800	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr15:59952200-59975400	Strong transcription	Fetal Thymus	thymus
45	chr15:59952200-59975600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr15:59952200-59976400	Strong transcription	Placenta	Placenta
47	chr15:59952400-59974800	Strong transcription	Fetal Intestine Large	intestine
48	chr15:59952400-59975800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr15:59952400-59977400	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr15:59952400-59978600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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