Variant report
Variant | rs28885082 |
---|---|
Chromosome Location | chr3:118967108-118967109 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:118963037..118965160-chr3:118965901..118967414,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10511384 | 0.91[ASN][1000 genomes] |
rs12690556 | 0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12695382 | 0.91[ASN][1000 genomes] |
rs12695383 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs13070981 | 0.99[ASN][1000 genomes] |
rs13091429 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs13094747 | 0.91[ASN][1000 genomes] |
rs13098659 | 0.86[ASN][1000 genomes] |
rs2001286 | 0.91[ASN][1000 genomes] |
rs28587867 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs28668839 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs35816234 | 0.91[ASN][1000 genomes] |
rs3752376 | 0.91[ASN][1000 genomes] |
rs3752377 | 0.91[ASN][1000 genomes] |
rs3796358 | 0.83[ASN][1000 genomes] |
rs4687843 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs57446248 | 0.87[ASN][1000 genomes] |
rs59140322 | 0.81[ASN][1000 genomes] |
rs59448071 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6808238 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs68103027 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs71325367 | 0.91[ASN][1000 genomes] |
rs7650288 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs9289125 | 0.91[ASN][1000 genomes] |
rs9812715 | 0.91[ASN][1000 genomes] |
rs9818595 | 0.90[ASN][1000 genomes] |
rs9824387 | 0.91[ASN][1000 genomes] |
rs9832248 | 0.91[ASN][1000 genomes] |
rs9834466 | 0.89[ASN][1000 genomes] |
rs9836230 | 0.91[ASN][1000 genomes] |
rs9837110 | 0.91[ASN][1000 genomes] |
rs9842789 | 0.84[AMR][1000 genomes] |
rs9844382 | 0.91[ASN][1000 genomes] |
rs9849672 | 0.89[ASN][1000 genomes] |
rs9850349 | 0.91[ASN][1000 genomes] |
rs9857127 | 0.91[ASN][1000 genomes] |
rs9858124 | 0.89[ASN][1000 genomes] |
rs9862321 | 0.91[ASN][1000 genomes] |
rs9867379 | 0.84[ASN][1000 genomes] |
rs9869645 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9874573 | 0.91[ASN][1000 genomes] |
rs9879593 | 0.89[ASN][1000 genomes] |
rs9881379 | 0.91[ASN][1000 genomes] |
rs9881947 | 0.91[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3487859 | chr3:118570588-119419623 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
2 | esv3487860 | chr3:118570588-119419623 | Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
3 | esv18354 | chr3:118855337-119000251 | Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:118961600-118967400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
2 | chr3:118966000-118968200 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |