Variant report

Variant	rs9869645
Chromosome Location	chr3:118962626-118962627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:118957827..118960579-chr3:118961178..118964196,3	K562	blood:
2	chr3:118959173..118960818-chr3:118962533..118964753,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000121578	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10511384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12690556	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12695382	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12695383	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13070981	0.99[ASN][1000 genomes]
rs13091429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13094747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13098659	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs2001286	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs28587867	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28668839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28885082	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35816234	0.91[ASN][1000 genomes]
rs3752376	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3752377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3796358	0.94[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs4687843	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57446248	0.87[ASN][1000 genomes]
rs59140322	0.81[ASN][1000 genomes]
rs59448071	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6438503	1.00[CEU][hapmap]
rs6808238	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs68103027	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71325367	0.91[ASN][1000 genomes]
rs7650288	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9289125	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9812715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9818595	0.90[ASN][1000 genomes]
rs9824387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9832248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9834466	0.94[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs9835060	0.88[CEU][hapmap]
rs9836230	0.91[ASN][1000 genomes]
rs9837110	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9842789	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9844382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9849672	0.89[ASN][1000 genomes]
rs9850349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9857127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9858124	0.89[ASN][1000 genomes]
rs9862321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9867379	0.84[ASN][1000 genomes]
rs9874573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9878996	0.94[CEU][hapmap]
rs9879593	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs9881379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9881947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv18354	chr3:118855337-119000251	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118960000-118964400	Weak transcription	Esophagus	oesophagus
2	chr3:118960200-118964200	Weak transcription	Psoas Muscle	Psoas
3	chr3:118960200-118964600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:118960200-118964600	Weak transcription	Right Atrium	heart
5	chr3:118960200-118964800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:118960400-118964400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:118960400-118966200	Weak transcription	Primary T cells from cord blood	blood
8	chr3:118960600-118964400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:118960600-118964600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:118960600-118964800	Weak transcription	Adipose Nuclei	Adipose
11	chr3:118960600-118964800	Weak transcription	Placenta	Placenta
12	chr3:118960800-118964600	Weak transcription	Stomach Mucosa	stomach
13	chr3:118961000-118964600	Weak transcription	Right Ventricle	heart
14	chr3:118961600-118967400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:118962600-118962800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:118962600-118962800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr3:118962600-118962800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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