Variant report

Variant	rs2889877
Chromosome Location	chr1:220112147-220112148
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10399645	1.00[MEX][hapmap]
rs11118488	1.00[MEX][hapmap]
rs11799573	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11800305	1.00[MEX][hapmap]
rs11807333	1.00[MEX][hapmap]
rs2647471	1.00[MEX][hapmap]
rs2647472	1.00[MEX][hapmap]
rs6663795	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6671629	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7523576	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7532814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs904327	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006393	chr1:219925261-220126458	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220105600-220113800	Weak transcription	Fetal Intestine Large	intestine
2	chr1:220111000-220112800	Enhancers	K562	blood
3	chr1:220111400-220113000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr1:220111800-220112600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:220112000-220112400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:220112000-220112800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:220112000-220112800	Enhancers	Hela-S3	cervix
8	chr1:220112000-220113400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:220112000-220114400	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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