Variant report

Variant	rs7523576
Chromosome Location	chr1:220103479-220103480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11799573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2889877	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6663795	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6671629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7532814	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006393	chr1:219925261-220126458	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220102800-220103600	Weak transcription	Fetal Intestine Large	intestine
2	chr1:220102800-220103800	Weak transcription	K562	blood
3	chr1:220102800-220106200	Enhancers	Liver	Liver
4	chr1:220103400-220104000	Weak transcription	HepG2	liver
5	chr1:220103400-220104600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr1:220103400-220105800	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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