Variant report

Variant	rs2889912
Chromosome Location	chr1:222076701-222076702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11118885	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11118886	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11118887	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11118888	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11118889	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11118892	0.88[EUR][1000 genomes]
rs12132356	0.83[ASN][1000 genomes]
rs2378490	0.93[ASN][1000 genomes]
rs2378491	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2378492	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35494468	0.81[ASN][1000 genomes]
rs36040446	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3748707	0.82[ASN][1000 genomes]
rs3924223	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4457591	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4460649	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6604685	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6657194	0.93[EUR][1000 genomes]
rs6673137	0.91[EUR][1000 genomes]
rs7534469	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002463	chr1:221863355-222095773	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv535302	chr1:221863355-222095773	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222071200-222085400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:222075200-222097400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:222075400-222079000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:222076600-222076800	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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