Variant report

Variant	rs12132356
Chromosome Location	chr1:222092700-222092701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11118897	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11118898	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11118899	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11118900	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11118901	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12034288	0.83[EUR][1000 genomes]
rs12035786	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12122784	0.83[EUR][1000 genomes]
rs12136822	0.89[EUR][1000 genomes]
rs12144436	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12743521	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12755244	0.83[EUR][1000 genomes]
rs17494423	0.86[EUR][1000 genomes]
rs2378490	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2889912	0.83[ASN][1000 genomes]
rs35494468	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3748707	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3828088	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3924223	0.88[ASN][1000 genomes]
rs4457591	0.85[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4636470	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4846734	0.88[EUR][1000 genomes]
rs4846735	0.88[EUR][1000 genomes]
rs61392684	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61826479	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6690767	0.81[EUR][1000 genomes]
rs6700163	0.81[EUR][1000 genomes]
rs7544501	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7544814	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002463	chr1:221863355-222095773	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv535302	chr1:221863355-222095773	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222075200-222097400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:222081200-222097600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:222086000-222097600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:222087600-222099200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr1:222092400-222092800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr1:222092600-222092800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:222092600-222092800	Enhancers	HSMMtube	muscle

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