Variant report

Variant	rs12144436
Chromosome Location	chr1:222107795-222107796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11118897	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11118898	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11118899	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118900	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118901	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12034288	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12035688	0.86[EUR][1000 genomes]
rs12035786	0.88[EUR][1000 genomes]
rs12122784	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12122940	0.86[EUR][1000 genomes]
rs12132356	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12136822	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12743521	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12755244	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17494423	0.94[EUR][1000 genomes]
rs2378490	0.81[EUR][1000 genomes]
rs35494468	0.89[EUR][1000 genomes]
rs3748707	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3828088	0.84[EUR][1000 genomes]
rs4636470	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4846734	0.82[EUR][1000 genomes]
rs4846735	0.82[EUR][1000 genomes]
rs61392684	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61826479	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6690767	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6700163	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7544501	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7544814	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222095400-222117800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:222098000-222118800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links