Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11118897	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11118898	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11118899	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11118900	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11118901	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12034288	0.81[EUR][1000 genomes]
rs12122784	0.81[EUR][1000 genomes]
rs12132356	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12136822	0.87[EUR][1000 genomes]
rs12144436	0.88[EUR][1000 genomes]
rs12743521	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12755244	0.81[EUR][1000 genomes]
rs17494423	0.84[EUR][1000 genomes]
rs2378490	0.87[EUR][1000 genomes]
rs35494468	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3748707	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3828088	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3924223	0.83[ASN][1000 genomes]
rs4457591	0.81[ASN][1000 genomes]
rs4636470	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4846734	0.86[EUR][1000 genomes]
rs4846735	0.86[EUR][1000 genomes]
rs61392684	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61826479	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7544501	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7544814	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002463	chr1:221863355-222095773	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv535302	chr1:221863355-222095773	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv1485716	chr1:222092112-222092114	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222075200-222097400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:222081200-222097600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:222083200-222092600	Weak transcription	HSMMtube	muscle
4	chr1:222083600-222092400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:222086000-222097600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:222087600-222099200	Weak transcription	Primary monocytes fromperipheralblood	blood

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