Variant report

Variant	rs12755244
Chromosome Location	chr1:222120335-222120336
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11118897	0.80[EUR][1000 genomes]
rs11118898	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11118899	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11118900	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11118901	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12034288	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12035688	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12035786	0.81[EUR][1000 genomes]
rs12122784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122940	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12132356	0.84[ASW][hapmap];0.90[CEU][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs12136822	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12144436	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12743521	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17494423	0.89[EUR][1000 genomes]
rs35494468	0.81[EUR][1000 genomes]
rs3748707	0.82[EUR][1000 genomes]
rs4636470	0.85[EUR][1000 genomes]
rs61392684	0.86[EUR][1000 genomes]
rs61826479	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6690767	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6700163	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7544501	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7544814	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv945304	chr1:222114347-222131255	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222115400-222131600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:222117800-222120400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:222118800-222123000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:222119000-222120800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:222119800-222120400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:222119800-222120600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin

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