Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:222077733..222080601-chr1:222081342..222088345,8	K562	blood:
2	chr1:222082218..222085229-chr1:222087059..222090544,3	MCF-7	breast:
3	chr1:222083017..222085674-chr1:222086266..222087921,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DUSP10-3	chr1:222087765-222087873	XLOC_001214
2	lnc-DUSP10-3	chr1:222087765-222087873	XLOC_001214

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11118885	0.87[ASN][1000 genomes]
rs11118886	0.87[ASN][1000 genomes]
rs11118887	0.87[ASN][1000 genomes]
rs11118888	0.87[ASN][1000 genomes]
rs11118889	0.87[ASN][1000 genomes]
rs11118897	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11118898	0.84[EUR][1000 genomes]
rs11118899	0.84[EUR][1000 genomes]
rs11118900	0.83[EUR][1000 genomes]
rs11118901	0.84[EUR][1000 genomes]
rs12035786	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12132356	1.00[CEU][hapmap];0.80[CHB][hapmap];0.91[CHD][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12136822	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12144436	0.84[EUR][1000 genomes]
rs12743521	0.82[EUR][1000 genomes]
rs2378490	0.82[EUR][1000 genomes]
rs2378491	0.87[ASN][1000 genomes]
rs2378492	0.87[ASN][1000 genomes]
rs35494468	0.91[EUR][1000 genomes]
rs36040446	0.86[ASN][1000 genomes]
rs3748707	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4457591	0.85[CHD][hapmap];0.80[JPT][hapmap]
rs4460649	0.87[ASN][1000 genomes]
rs4636470	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4846734	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4846735	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61392684	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61826479	0.83[EUR][1000 genomes]
rs6604685	0.87[ASN][1000 genomes]
rs6657194	0.87[ASN][1000 genomes]
rs6673137	0.87[ASN][1000 genomes]
rs7534469	0.87[ASN][1000 genomes]
rs7544501	0.84[EUR][1000 genomes]
rs7544814	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002463	chr1:221863355-222095773	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv535302	chr1:221863355-222095773	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222075200-222097400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:222081200-222097600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:222083200-222092600	Weak transcription	HSMMtube	muscle
4	chr1:222083600-222092400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:222086000-222097600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:222087600-222099200	Weak transcription	Primary monocytes fromperipheralblood	blood

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