Variant report

Variant	rs28902238
Chromosome Location	chr2:234927693-234927694
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11562942	0.88[CEU][hapmap]
rs17864786	1.00[EUR][1000 genomes]
rs17864787	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17865676	0.88[CEU][hapmap]
rs17865689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17866591	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17866595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17869080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17874956	0.88[CEU][hapmap]
rs17874960	1.00[EUR][1000 genomes]
rs72974155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs763379	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs763380	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234926800-234930600	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links