Variant report

Variant	rs72974155
Chromosome Location	chr2:234913982-234913983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17864786	1.00[EUR][1000 genomes]
rs17864787	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17865689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17866591	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17866595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17869080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17874960	1.00[EUR][1000 genomes]
rs28902238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs763379	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs763380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234909600-234919000	Strong transcription	Liver	Liver
2	chr2:234912000-234914000	Enhancers	NHDF-Ad	bronchial
3	chr2:234912400-234914000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr2:234912400-234914000	Enhancers	HSMM	muscle
5	chr2:234912800-234914000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:234913000-234914200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:234913000-234917400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:234913400-234914000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:234913400-234914000	Enhancers	A549	lung
10	chr2:234913600-234914000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:234913600-234914200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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