Variant report

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10168712	0.87[CEU][hapmap]
rs10171587	0.85[CEU][hapmap]
rs10172000	0.87[CEU][hapmap]
rs10178472	0.88[EUR][1000 genomes]
rs10192448	0.88[EUR][1000 genomes]
rs10195232	0.86[EUR][1000 genomes]
rs10197450	0.90[CEU][hapmap]
rs10200368	1.00[CEU][hapmap]
rs10205160	0.87[CEU][hapmap]
rs10210816	0.88[EUR][1000 genomes]
rs10803669	0.88[EUR][1000 genomes]
rs11563193	0.98[ASN][1000 genomes]
rs13017720	0.98[ASN][1000 genomes]
rs1354895	0.87[CEU][hapmap]
rs17864802	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17864805	0.88[EUR][1000 genomes]
rs17869100	0.88[EUR][1000 genomes]
rs1911592	0.84[CEU][hapmap]
rs1911593	0.87[CEU][hapmap]
rs1911594	0.85[CEU][hapmap]
rs1911595	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2267900	0.87[CEU][hapmap]
rs2267901	0.87[CEU][hapmap]
rs2267902	0.87[CEU][hapmap]
rs2267904	0.87[CEU][hapmap]
rs2284294	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28903710	0.98[ASN][1000 genomes]
rs3771331	0.87[CEU][hapmap]
rs3771332	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3819748	0.88[EUR][1000 genomes]
rs4233639	0.87[CEU][hapmap]
rs4664007	0.87[CEU][hapmap]
rs6739495	0.87[CEU][hapmap]
rs7557035	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7608191	0.87[CEU][hapmap]
rs9636245	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv834571	chr2:234929288-235110332	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234972600-234985600	Strong transcription	Liver	Liver
2	chr2:234973000-234974600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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