Variant report

Variant	rs17864805
Chromosome Location	chr2:234969327-234969328
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10168712	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10171064	1.00[ASN][1000 genomes]
rs10171587	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10172000	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10178472	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10192448	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10195232	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10197450	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10200368	0.85[EUR][1000 genomes]
rs10205160	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10210816	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10803669	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389896	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13395783	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1354895	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17864802	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17869100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1911592	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1911593	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1911594	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1911595	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2239536	1.00[ASN][1000 genomes]
rs2267900	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2267901	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2267902	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2267904	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28903704	0.88[EUR][1000 genomes]
rs3771331	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3819748	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4233639	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4664004	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4664007	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs634613	0.91[AMR][1000 genomes]
rs665535	0.91[AMR][1000 genomes]
rs6739495	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7608191	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9636245	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv834571	chr2:234929288-235110332	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234965600-234971200	Genic enhancers	Liver	Liver
2	chr2:234966200-234970800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:234969200-234970800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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