Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10171064	1.00[ASN][1000 genomes]
rs10171587	0.82[GIH][hapmap]
rs10178472	1.00[ASN][1000 genomes]
rs10192448	1.00[ASN][1000 genomes]
rs10193392	0.89[GIH][hapmap]
rs10195232	0.95[ASN][1000 genomes]
rs10210816	1.00[ASN][1000 genomes]
rs10803669	1.00[ASN][1000 genomes]
rs13389896	0.84[EUR][1000 genomes]
rs13395783	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17864805	1.00[ASN][1000 genomes]
rs17866614	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17869100	1.00[ASN][1000 genomes]
rs1911592	0.82[GIH][hapmap]
rs1911594	0.82[GIH][hapmap]
rs2267903	0.89[GIH][hapmap]
rs3819748	1.00[ASN][1000 genomes]
rs596463	0.83[GIH][hapmap]
rs620654	0.83[GIH][hapmap]
rs6715369	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7585488	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7603271	0.89[GIH][hapmap]
rs9636245	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv834571	chr2:234929288-235110332	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234965600-234971200	Genic enhancers	Liver	Liver
2	chr2:234966200-234970800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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