Variant report

Variant	rs13395783
Chromosome Location	chr2:234965870-234965871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10171064	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10178472	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10192448	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10193392	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10195232	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10197450	0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10207367	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10210816	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10803669	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11563194	0.84[EUR][1000 genomes]
rs11563195	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13389896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13396164	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1354896	0.84[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1395841	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17864802	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17864805	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17865706	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17866615	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs17869100	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1911595	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2239536	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2267901	0.83[AMR][1000 genomes]
rs2267903	0.81[CEU][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28903684	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs3771332	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs3819748	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs634613	0.87[YRI][hapmap];0.88[AMR][1000 genomes]
rs665535	0.88[YRI][hapmap];0.88[AMR][1000 genomes]
rs7603271	0.81[CEU][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9636245	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv834571	chr2:234929288-235110332	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234965600-234966200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:234965600-234966200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:234965600-234971200	Genic enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links