Variant report

Variant	rs2890900
Chromosome Location	chr9:9998082-9998083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10217554	0.99[ASN][1000 genomes]
rs10755996	0.85[ASN][1000 genomes]
rs10759122	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10809012	0.85[ASN][1000 genomes]
rs10816271	0.99[ASN][1000 genomes]
rs1235648	0.82[ASN][1000 genomes]
rs1372235	0.83[ASN][1000 genomes]
rs1419187	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1891916	0.97[ASN][1000 genomes]
rs1891917	0.99[ASN][1000 genomes]
rs1936368	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2382104	0.85[ASN][1000 genomes]
rs4604499	0.99[ASN][1000 genomes]
rs7027381	0.99[ASN][1000 genomes]
rs7031512	0.99[ASN][1000 genomes]
rs7034072	0.87[ASN][1000 genomes]
rs7044383	0.99[ASN][1000 genomes]
rs7047439	0.99[ASN][1000 genomes]
rs7048694	0.93[ASN][1000 genomes]
rs7466785	0.99[ASN][1000 genomes]
rs7860568	0.87[ASN][1000 genomes]
rs7870535	0.83[ASN][1000 genomes]
rs9722667	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892295	chr9:9832245-10380406	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613359	chr9:9904481-10008130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1031978	chr9:9905053-10006290	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv539987	chr9:9905053-10006290	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1025234	chr9:9905178-10011184	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1026679	chr9:9919783-10069385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1032019	chr9:9919783-10070211	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1021380	chr9:9943339-10126281	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv539989	chr9:9943339-10126281	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1017182	chr9:9945265-10011933	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
12	nsv1018157	chr9:9945648-10014310	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
13	nsv1017405	chr9:9950856-10006290	ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers	n/a	n/a	inside rSNPs	diseases
14	nsv539990	chr9:9950856-10006290	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
15	nsv525613	chr9:9957866-10011571	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	inside rSNPs	diseases
16	nsv526124	chr9:9957866-10011571	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
17	nsv613366	chr9:9957866-10011571	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
18	nsv613367	chr9:9957866-10025975	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
19	nsv892301	chr9:9971050-10144584	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv892302	chr9:9974221-10158866	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv466155	chr9:9989765-10091133	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv613370	chr9:9989765-10091133	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv1019977	chr9:9994437-10036626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
24	nsv539992	chr9:9994437-10036626	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
25	nsv1027541	chr9:9994637-10036487	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
26	nsv539993	chr9:9994637-10036487	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
27	esv2755136	chr9:9995882-10065206	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9989800-10000400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:9990000-9999000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:9995000-9998600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:9995200-9998200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr9:9995200-9999200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr9:9995200-9999200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr9:9995200-9999400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr9:9995200-10001000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr9:9996200-9999000	Enhancers	Primary hematopoietic stem cells	blood
10	chr9:9996800-9998600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:9996800-9999200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr9:9997200-9998200	Weak transcription	HUVEC	blood vessel
13	chr9:9997200-9999000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:9997200-9999200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr9:9997400-9998600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr9:9997400-9998600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr9:9997400-9999400	Enhancers	H9 Cell Line	embryonic stem cell
18	chr9:9997600-10000400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:9997600-10000800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr9:9997800-9998200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr9:9997800-9998800	Weak transcription	Fetal Heart	heart
22	chr9:9997800-9999000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:9998000-9998800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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