Variant report

Variant	rs7860568
Chromosome Location	chr9:10012637-10012638
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10217554	0.87[ASN][1000 genomes]
rs10755996	0.94[ASN][1000 genomes]
rs10759122	0.87[ASN][1000 genomes]
rs10809012	0.94[ASN][1000 genomes]
rs10816271	0.87[ASN][1000 genomes]
rs10958840	0.88[ASN][1000 genomes]
rs1217007	0.85[ASN][1000 genomes]
rs1235648	0.91[ASN][1000 genomes]
rs12552305	0.85[ASN][1000 genomes]
rs1372235	0.96[ASN][1000 genomes]
rs1419187	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1441410	0.88[ASN][1000 genomes]
rs1891916	0.85[ASN][1000 genomes]
rs1891917	0.87[ASN][1000 genomes]
rs1936368	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2382104	0.97[ASN][1000 genomes]
rs2890900	0.87[ASN][1000 genomes]
rs35629823	0.89[ASN][1000 genomes]
rs4604499	0.87[ASN][1000 genomes]
rs4740441	0.89[ASN][1000 genomes]
rs7021548	0.89[ASN][1000 genomes]
rs7022669	0.89[ASN][1000 genomes]
rs7027381	0.87[ASN][1000 genomes]
rs7031512	0.87[ASN][1000 genomes]
rs7034072	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7044383	0.87[ASN][1000 genomes]
rs7047439	0.87[ASN][1000 genomes]
rs7048694	0.81[ASN][1000 genomes]
rs7466785	0.87[ASN][1000 genomes]
rs7848407	0.87[ASN][1000 genomes]
rs7856447	0.86[ASN][1000 genomes]
rs9722667	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892295	chr9:9832245-10380406	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1026679	chr9:9919783-10069385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1032019	chr9:9919783-10070211	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1021380	chr9:9943339-10126281	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv539989	chr9:9943339-10126281	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1018157	chr9:9945648-10014310	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
8	nsv613367	chr9:9957866-10025975	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
9	nsv892301	chr9:9971050-10144584	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv892302	chr9:9974221-10158866	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv466155	chr9:9989765-10091133	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv613370	chr9:9989765-10091133	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1019977	chr9:9994437-10036626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
14	nsv539992	chr9:9994437-10036626	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
15	nsv1027541	chr9:9994637-10036487	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
16	nsv539993	chr9:9994637-10036487	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
17	esv2755136	chr9:9995882-10065206	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv1030657	chr9:10002355-10481262	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	nsv969774	chr9:10011936-10016071	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:10008200-10012800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr9:10008600-10013000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr9:10008600-10013400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr9:10009400-10012800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:10012400-10013000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr9:10012400-10013800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr9:10012600-10012800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr9:10012600-10013400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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