Variant report

Variant	rs28912694
Chromosome Location	chr7:7747779-7747780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10486185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11761559	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11762695	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11763947	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11765275	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11771027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12702639	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13225697	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13234396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13245945	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13247039	0.93[EUR][1000 genomes]
rs1468760	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1468761	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17136437	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17136498	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17169361	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17169446	1.00[AFR][1000 genomes]
rs17169495	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17169553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17169565	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17546242	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2110554	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28912668	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28912672	0.87[ASN][1000 genomes]
rs28914168	0.97[ASN][1000 genomes]
rs28914835	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28915072	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs28915973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28915985	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs28916271	1.00[AFR][1000 genomes]
rs28992771	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs28992773	1.00[AFR][1000 genomes]
rs28992774	1.00[AFR][1000 genomes]
rs34124547	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35209697	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35639902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35823742	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62432576	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62432577	0.97[ASN][1000 genomes]
rs62432578	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62432579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62432580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62432581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62432607	0.89[EUR][1000 genomes]
rs62452504	1.00[AFR][1000 genomes]
rs62452508	1.00[AFR][1000 genomes]
rs62452509	1.00[AFR][1000 genomes]
rs62452512	1.00[AFR][1000 genomes]
rs62452515	0.86[ASN][1000 genomes]
rs6964727	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7791543	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7798277	0.87[EUR][1000 genomes]
rs7800009	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9648617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9692373	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv606042	chr7:7427535-7876466	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv887477	chr7:7531819-7810122	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1032670	chr7:7535515-8017077	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv8043	chr7:7589195-7862802	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv887478	chr7:7670718-7917360	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
7	nsv887479	chr7:7681131-7779091	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv887480	chr7:7681131-7917360	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv887481	chr7:7681576-7779324	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv887482	chr7:7682439-7785047	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv887483	chr7:7682439-7798217	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv887484	chr7:7692483-7769363	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv887485	chr7:7692483-7917360	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv606045	chr7:7704889-7755491	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv887486	chr7:7712498-7785047	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
17	nsv1026564	chr7:7734846-7897847	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
18	nsv887487	chr7:7740914-7802561	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7717800-7749000	Weak transcription	Fetal Intestine Small	intestine
2	chr7:7721600-7748800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr7:7722000-7750600	Weak transcription	Primary B cells from cord blood	blood
4	chr7:7727800-7748800	Weak transcription	Small Intestine	intestine
5	chr7:7736800-7748600	Weak transcription	Stomach Mucosa	stomach
6	chr7:7737600-7778800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:7739400-7749000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:7739600-7748400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr7:7740000-7759000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:7743600-7749000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr7:7743600-7762800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:7743600-7772800	Weak transcription	Gastric	stomach
13	chr7:7744800-7749000	Weak transcription	Right Ventricle	heart
14	chr7:7745400-7747800	Enhancers	HSMM	muscle
15	chr7:7745400-7749200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:7745600-7758800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:7745800-7747800	Enhancers	Rectal Smooth Muscle	rectum
18	chr7:7745800-7750000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr7:7746000-7748400	Weak transcription	Brain Hippocampus Middle	brain
20	chr7:7746000-7762400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr7:7746200-7747800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:7746200-7747800	Enhancers	HSMMtube	muscle
23	chr7:7746200-7749200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:7746200-7749800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:7746400-7747800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:7746400-7748000	Enhancers	Fetal Brain Female	brain
27	chr7:7746400-7749200	Enhancers	Fetal Heart	heart
28	chr7:7746400-7749400	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr7:7746600-7749200	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr7:7746600-7751800	Weak transcription	Dnd41	blood
31	chr7:7746800-7749200	Active TSS	Aorta	Aorta
32	chr7:7746800-7749400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:7746800-7750000	Enhancers	H1 Cell Line	embryonic stem cell
34	chr7:7747000-7747800	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr7:7747000-7748000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr7:7747000-7749800	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr7:7747200-7747800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr7:7747200-7747800	Enhancers	Osteobl	bone
39	chr7:7747200-7748000	Flanking Active TSS	Brain Germinal Matrix	brain
40	chr7:7747200-7748200	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr7:7747200-7748200	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr7:7747200-7753200	Weak transcription	GM12878-XiMat	blood
43	chr7:7747400-7747800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
44	chr7:7747400-7747800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr7:7747400-7747800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr7:7747400-7747800	Flanking Active TSS	Fetal Brain Male	brain
47	chr7:7747400-7747800	Enhancers	A549	lung
48	chr7:7747400-7747800	Enhancers	HMEC	breast
49	chr7:7747400-7747800	Flanking Active TSS	NH-A	brain
50	chr7:7747400-7748000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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