Variant report

Variant	rs28913918
Chromosome Location	chr4:100238715-100238716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100231557..100233908-chr4:100237578..100239506,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1155528	0.81[AFR][1000 genomes]
rs28364291	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28364300	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28364318	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28364337	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28720136	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28720153	1.00[AMR][1000 genomes]
rs28720158	1.00[AMR][1000 genomes]
rs28914776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28914777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6835295	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv879656	chr4:99976646-100533722	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv3355763	chr4:100070566-100376814	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1014237	chr4:100102701-100365700	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1010988	chr4:100105463-100444445	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1000659	chr4:100117276-100444445	Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv999549	chr4:100121609-100351749	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3353320	chr4:100147870-100425701	Genic enhancers ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv3394995	chr4:100147890-100425671	Enhancers Genic enhancers Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	esv3446139	chr4:100213459-100244162	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv3387812	chr4:100232775-100261923	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1002809	chr4:100234048-100285508	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv3394945	chr4:100237238-100266245	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100231000-100243000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:100231200-100242800	Weak transcription	Gastric	stomach
3	chr4:100233000-100244400	Weak transcription	NHDF-Ad	bronchial
4	chr4:100233600-100239600	Weak transcription	Esophagus	oesophagus
5	chr4:100237000-100241800	Transcr. at gene 5' and 3'	Fetal Lung	lung
6	chr4:100237200-100238800	Weak transcription	Left Ventricle	heart
7	chr4:100237200-100238800	Weak transcription	Spleen	Spleen
8	chr4:100237200-100240000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:100237400-100240400	Weak transcription	Colonic Mucosa	Colon
10	chr4:100238000-100239000	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr4:100238000-100239400	Transcr. at gene 5' and 3'	Adipose Nuclei	Adipose
12	chr4:100238400-100238800	Active TSS	Right Atrium	heart
13	chr4:100238400-100240600	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:100238600-100238800	Strong transcription	Lung	lung
15	chr4:100238600-100238800	Enhancers	Small Intestine	intestine
16	chr4:100238600-100239000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:100238600-100239000	Active TSS	Stomach Smooth Muscle	stomach
18	chr4:100238600-100239200	Active TSS	Colon Smooth Muscle	Colon
19	chr4:100238600-100239200	Active TSS	Duodenum Mucosa	Duodenum
20	chr4:100238600-100239200	ZNF genes & repeats	Fetal Brain Male	brain
21	chr4:100238600-100239200	Active TSS	Rectal Mucosa Donor 31	rectum
22	chr4:100238600-100239400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr4:100238600-100239400	Strong transcription	Aorta	Aorta
24	chr4:100238600-100239400	Genic enhancers	Ovary	ovary
25	chr4:100238600-100240000	Active TSS	Rectal Smooth Muscle	rectum
26	chr4:100238600-100240600	Transcr. at gene 5' and 3'	Liver	Liver

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