Variant report

Variant	rs28921403
Chromosome Location	chr8:107697131-107697132
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107668570..107671221-chr8:107695666..107698146,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164830	Chromatin interaction
ENSG00000253582	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28921438	1.00[AMR][1000 genomes]
rs28924707	1.00[AMR][1000 genomes]
rs6469082	1.00[AMR][1000 genomes]
rs7832868	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv611845	chr8:107689295-107698966	Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv982112	chr8:107694955-107697862	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107671200-107697200	Weak transcription	HSMM	muscle
2	chr8:107672200-107718800	Weak transcription	Psoas Muscle	Psoas
3	chr8:107672400-107718600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr8:107676200-107697400	Weak transcription	Left Ventricle	heart
5	chr8:107677600-107709400	Weak transcription	Pancreas	Pancrea
6	chr8:107677600-107718800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr8:107679200-107738200	Weak transcription	Right Ventricle	heart
8	chr8:107681200-107730200	Weak transcription	Small Intestine	intestine
9	chr8:107683800-107718800	Weak transcription	Hela-S3	cervix
10	chr8:107686000-107709200	Weak transcription	Gastric	stomach
11	chr8:107686200-107709200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:107686400-107697400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:107686400-107709000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:107686400-107709000	Weak transcription	Esophagus	oesophagus
15	chr8:107686400-107709000	Weak transcription	Spleen	Spleen
16	chr8:107686600-107697400	Weak transcription	Fetal Intestine Large	intestine
17	chr8:107686600-107709000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:107686600-107709000	Weak transcription	Fetal Stomach	stomach
19	chr8:107686600-107711800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr8:107687200-107697400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr8:107687200-107697400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr8:107687200-107707600	Weak transcription	Fetal Intestine Small	intestine
23	chr8:107687200-107709000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:107688000-107713000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:107688600-107709200	Weak transcription	Aorta	Aorta
26	chr8:107688600-107718600	Weak transcription	Stomach Mucosa	stomach
27	chr8:107690200-107730600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr8:107690400-107709200	Weak transcription	Ovary	ovary
29	chr8:107691600-107697200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr8:107691600-107718600	Weak transcription	K562	blood
31	chr8:107692000-107697400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr8:107692000-107697400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr8:107692000-107738400	Weak transcription	Colon Smooth Muscle	Colon
34	chr8:107692400-107700800	Weak transcription	Brain Hippocampus Middle	brain
35	chr8:107692600-107706400	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr8:107692800-107700000	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr8:107692800-107700000	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr8:107692800-107725800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr8:107693000-107709800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr8:107693200-107699600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr8:107693200-107699800	Strong transcription	Primary B cells from peripheral blood	blood
42	chr8:107693200-107700600	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr8:107693600-107706600	Strong transcription	Liver	Liver
44	chr8:107693800-107699800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr8:107693800-107701600	Strong transcription	Primary B cells from cord blood	blood
46	chr8:107694000-107699400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr8:107694600-107699600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr8:107694600-107719000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr8:107694600-107738000	Weak transcription	Fetal Heart	heart
50	chr8:107694800-107697200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links