Variant report

Variant	rs28924707
Chromosome Location	chr8:107763746-107763747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107750673..107753111-chr8:107761641..107763838,2	K562	blood:

Variant related genes	Relation type
ENSG00000164830	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16875293	1.00[AMR][1000 genomes]
rs16875295	1.00[AMR][1000 genomes]
rs16875302	1.00[AMR][1000 genomes]
rs28921403	1.00[AMR][1000 genomes]
rs28921438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4628237	1.00[AMR][1000 genomes]
rs6469082	1.00[AMR][1000 genomes]
rs7007060	1.00[AMR][1000 genomes]
rs7832868	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1032991	chr8:107756661-107819035	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv971345	chr8:107763137-107763760	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107719600-107765600	Weak transcription	Colonic Mucosa	Colon
2	chr8:107719600-107775200	Weak transcription	Gastric	stomach
3	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
4	chr8:107739000-107775200	Weak transcription	A549	lung
5	chr8:107740000-107775200	Weak transcription	Ovary	ovary
6	chr8:107740200-107767400	Weak transcription	K562	blood
7	chr8:107740200-107783800	Weak transcription	Fetal Brain Male	brain
8	chr8:107740800-107775200	Weak transcription	Brain Substantia Nigra	brain
9	chr8:107741000-107768200	Weak transcription	Brain Germinal Matrix	brain
10	chr8:107747000-107768000	Weak transcription	Small Intestine	intestine
11	chr8:107749200-107765000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr8:107749400-107775200	Weak transcription	HMEC	breast
13	chr8:107751000-107764800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr8:107753200-107771400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr8:107753600-107777400	Weak transcription	HUVEC	blood vessel
16	chr8:107753800-107775200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr8:107754200-107775200	Weak transcription	Pancreas	Pancrea
18	chr8:107754400-107766400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:107754800-107775200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:107755200-107764600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:107755200-107772000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr8:107755400-107771600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr8:107755800-107771200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr8:107755800-107777800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr8:107756000-107775000	Weak transcription	Fetal Heart	heart
26	chr8:107756400-107766800	Weak transcription	Primary T cells from cord blood	blood
27	chr8:107756400-107767000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr8:107756400-107772400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr8:107756400-107775000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr8:107756400-107777800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr8:107756600-107764000	Weak transcription	Fetal Lung	lung
32	chr8:107756600-107765400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr8:107756600-107765400	Weak transcription	Dnd41	blood
34	chr8:107756600-107769800	Weak transcription	Brain Hippocampus Middle	brain
35	chr8:107756600-107771200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr8:107756600-107772000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr8:107756600-107772200	Weak transcription	Primary hematopoietic stem cells	blood
38	chr8:107756600-107772400	Weak transcription	Left Ventricle	heart
39	chr8:107756600-107772800	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr8:107756600-107775200	Weak transcription	Brain Angular Gyrus	brain
41	chr8:107756600-107775200	Weak transcription	Brain Anterior Caudate	brain
42	chr8:107756600-107775200	Weak transcription	Fetal Intestine Large	intestine
43	chr8:107756600-107775200	Weak transcription	Fetal Kidney	kidney
44	chr8:107756600-107775200	Weak transcription	Fetal Muscle Leg	muscle
45	chr8:107756600-107775200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr8:107756600-107777400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr8:107756600-107777400	Weak transcription	Psoas Muscle	Psoas
48	chr8:107756600-107777600	Weak transcription	Fetal Brain Female	brain
49	chr8:107756800-107766600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr8:107756800-107775200	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links