Variant report

Variant	rs2892217
Chromosome Location	chr20:24645939-24645940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24645110..24646856-chr20:24648654..24651485,2	MCF-7	breast:
2	chr20:24645518..24647041-chr20:24652515..24654778,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56235838	0.82[ASN][1000 genomes]
rs6076248	0.82[ASN][1000 genomes]
rs6114819	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv524920	chr20:24639916-24683554	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1061537	chr20:24643869-24683649	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24634600-24648800	Weak transcription	Gastric	stomach
2	chr20:24639000-24650400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:24639200-24648600	Weak transcription	Spleen	Spleen
4	chr20:24640400-24646000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr20:24641200-24654000	Weak transcription	Aorta	Aorta
6	chr20:24641400-24649400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr20:24641600-24646200	Enhancers	Fetal Muscle Leg	muscle
8	chr20:24641800-24649800	Weak transcription	Right Ventricle	heart
9	chr20:24643400-24649400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr20:24643400-24661400	Weak transcription	Right Atrium	heart
11	chr20:24644400-24646400	Weak transcription	Fetal Brain Female	brain
12	chr20:24645000-24646200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr20:24645000-24646800	Enhancers	Brain Cingulate Gyrus	brain
14	chr20:24645200-24646000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr20:24645200-24646600	Enhancers	Brain Substantia Nigra	brain
16	chr20:24645400-24646800	Enhancers	Brain Hippocampus Middle	brain
17	chr20:24645600-24646400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr20:24645800-24646200	Enhancers	Fetal Brain Male	brain
19	chr20:24645800-24646400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr20:24645800-24646600	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr20:24645800-24646800	Enhancers	Brain Angular Gyrus	brain
22	chr20:24645800-24657200	Weak transcription	Brain Anterior Caudate	brain

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