Variant report

Variant	rs28928602
Chromosome Location	chr8:103227807-103227808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103196040..103198628-chr8:103227522..103229929,2	MCF-7	breast:
2	chr8:103213776..103215791-chr8:103226604..103228788,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1037698	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10505023	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10505026	1.00[ASN][1000 genomes]
rs11575866	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11783533	1.00[ASN][1000 genomes]
rs16869246	1.00[ASN][1000 genomes]
rs17185155	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17185245	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17432015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17433890	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17509673	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17512347	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17512821	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1824194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28927372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28928568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28928570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28928575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28928577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28928583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28928584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28928588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28928589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28928594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28928595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28928599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28928601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28928606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28999688	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28999709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29000269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29000275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29000279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29000280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29000281	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs29000284	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3204695	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34739767	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35066978	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4102401	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56273032	1.00[ASN][1000 genomes]
rs58160045	1.00[ASN][1000 genomes]
rs73285249	1.00[ASN][1000 genomes]
rs73285260	1.00[ASN][1000 genomes]
rs7836803	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020359	chr8:103109921-103318415	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1021459	chr8:103163436-103401754	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv539701	chr8:103163436-103401754	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv1018990	chr8:103207922-103357742	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv539702	chr8:103207922-103357742	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv1028890	chr8:103207922-103401754	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv891242	chr8:103210971-103282418	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv891243	chr8:103219629-103292724	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103209800-103229600	Weak transcription	A549	lung
2	chr8:103209800-103229800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:103209800-103229800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr8:103209800-103230400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr8:103209800-103230400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:103209800-103230400	Weak transcription	Aorta	Aorta
7	chr8:103209800-103230400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr8:103209800-103230400	Weak transcription	Thymus	Thymus
9	chr8:103209800-103230800	Weak transcription	Right Ventricle	heart
10	chr8:103209800-103233400	Weak transcription	Esophagus	oesophagus
11	chr8:103209800-103233800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr8:103209800-103236800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr8:103209800-103239200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr8:103209800-103244800	Weak transcription	Stomach Mucosa	stomach
15	chr8:103210000-103229800	Weak transcription	Brain Hippocampus Middle	brain
16	chr8:103210000-103230200	Weak transcription	Brain Angular Gyrus	brain
17	chr8:103210600-103239600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:103210800-103232000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr8:103211000-103230400	Weak transcription	Fetal Brain Female	brain
20	chr8:103215000-103229600	Weak transcription	HUVEC	blood vessel
21	chr8:103215600-103248400	Weak transcription	Psoas Muscle	Psoas
22	chr8:103216200-103229800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr8:103216200-103230400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr8:103216200-103247400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:103216400-103245200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:103216400-103246600	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr8:103216600-103230400	Weak transcription	Gastric	stomach
28	chr8:103216600-103231000	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr8:103216800-103229800	Weak transcription	Dnd41	blood
30	chr8:103217000-103248400	Weak transcription	Small Intestine	intestine
31	chr8:103217200-103240000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr8:103217200-103240200	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr8:103217200-103240200	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr8:103217400-103238400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr8:103217600-103230200	Weak transcription	Brain Substantia Nigra	brain
36	chr8:103217800-103239800	Weak transcription	K562	blood
37	chr8:103217800-103246400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr8:103218000-103228000	Strong transcription	Adipose Nuclei	Adipose
39	chr8:103218000-103246200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr8:103218400-103228200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr8:103218400-103238600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr8:103218400-103240000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr8:103218600-103228000	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr8:103218600-103229800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr8:103218600-103230000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr8:103218600-103230400	Weak transcription	Pancreas	Pancrea
47	chr8:103218600-103230400	Weak transcription	Spleen	Spleen
48	chr8:103218600-103244200	Weak transcription	Fetal Heart	heart
49	chr8:103219200-103228000	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr8:103219200-103238400	Strong transcription	Liver	Liver

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