Variant report

Variant	rs56273032
Chromosome Location	chr8:103429261-103429262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr8:103428512-103429261	HepG2	liver:	n/a	n/a
2	GATA3	chr8:103429147-103429506	T-47D	breast:	n/a	n/a
3	HNF4A	chr8:103428616-103429268	HepG2	liver:	n/a	chr8:103428996-103429008 chr8:103429021-103429033 chr8:103428998-103429005 chr8:103429020-103429035 chr8:103428993-103429009
4	EP300	chr8:103428485-103429399	HepG2	liver:	n/a	n/a
5	SP1	chr8:103428624-103429271	HepG2	liver:	n/a	chr8:103428871-103428884
6	TCF7L2	chr8:103428607-103429351	HepG2	liver:	n/a	n/a
7	TEAD4	chr8:103428436-103429395	HepG2	liver:	n/a	n/a
8	MYBL2	chr8:103428538-103429279	HepG2	liver:	n/a	n/a
9	NR2F2	chr8:103428548-103429270	HepG2	liver:	n/a	n/a
10	GATA3	chr8:103428508-103429567	MCF-7	breast:	n/a	chr8:103428987-103428996 chr8:103428987-103428997 chr8:103428976-103428989 chr8:103428984-103429000 chr8:103428583-103428599
11	NR2F2	chr8:103428518-103429379	HepG2	liver:	n/a	n/a
12	FOXA2	chr8:103428442-103429332	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103428267..103430247-chr8:103432746..103436160,3	K562	blood:

Variant related genes	Relation type
UBR5	TF binding region
ENSG00000253923	TF binding region
RNU6ATAC8P	TF binding region
ENSG00000221387	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1037698	1.00[ASN][1000 genomes]
rs10505023	1.00[ASN][1000 genomes]
rs10505026	1.00[ASN][1000 genomes]
rs11575866	1.00[ASN][1000 genomes]
rs11783533	1.00[ASN][1000 genomes]
rs16869246	1.00[ASN][1000 genomes]
rs17185155	1.00[ASN][1000 genomes]
rs17185245	1.00[ASN][1000 genomes]
rs17432015	1.00[ASN][1000 genomes]
rs17433890	1.00[ASN][1000 genomes]
rs17509673	1.00[ASN][1000 genomes]
rs17512347	1.00[ASN][1000 genomes]
rs17512821	1.00[ASN][1000 genomes]
rs1824194	1.00[ASN][1000 genomes]
rs28927372	1.00[ASN][1000 genomes]
rs28928568	1.00[ASN][1000 genomes]
rs28928570	1.00[ASN][1000 genomes]
rs28928575	1.00[ASN][1000 genomes]
rs28928577	1.00[ASN][1000 genomes]
rs28928583	1.00[ASN][1000 genomes]
rs28928584	1.00[ASN][1000 genomes]
rs28928588	1.00[ASN][1000 genomes]
rs28928589	1.00[ASN][1000 genomes]
rs28928594	1.00[ASN][1000 genomes]
rs28928595	1.00[ASN][1000 genomes]
rs28928599	1.00[ASN][1000 genomes]
rs28928601	1.00[ASN][1000 genomes]
rs28928602	1.00[ASN][1000 genomes]
rs28928606	1.00[ASN][1000 genomes]
rs28999688	1.00[ASN][1000 genomes]
rs28999709	1.00[ASN][1000 genomes]
rs29000269	1.00[ASN][1000 genomes]
rs29000275	1.00[ASN][1000 genomes]
rs29000279	1.00[ASN][1000 genomes]
rs29000280	1.00[ASN][1000 genomes]
rs29000281	1.00[ASN][1000 genomes]
rs29000284	1.00[ASN][1000 genomes]
rs3204695	1.00[ASN][1000 genomes]
rs34739767	1.00[ASN][1000 genomes]
rs35066978	1.00[ASN][1000 genomes]
rs4102401	1.00[ASN][1000 genomes]
rs58160045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60167504	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73285249	1.00[ASN][1000 genomes]
rs73285260	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73285269	0.96[EUR][1000 genomes]
rs7836803	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv891244	chr8:103309862-103483466	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
6	nsv1023938	chr8:103369215-103538708	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103425600-103432600	Weak transcription	Left Ventricle	heart
2	chr8:103425800-103434800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:103425800-103437800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:103425800-103439600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:103425800-103439600	Weak transcription	Fetal Stomach	stomach
6	chr8:103426000-103432200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:103426200-103439600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:103426400-103434800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:103427600-103429400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr8:103427800-103429600	Enhancers	Fetal Intestine Large	intestine
11	chr8:103428200-103429800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:103428200-103430000	Weak transcription	GM12878-XiMat	blood
13	chr8:103428800-103429400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr8:103428800-103429600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:103429000-103429400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr8:103429000-103430400	Enhancers	HepG2	liver
17	chr8:103429000-103432800	Weak transcription	Primary B cells from cord blood	blood
18	chr8:103429200-103429400	Enhancers	Placenta	Placenta
19	chr8:103429200-103430200	Enhancers	Right Atrium	heart

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