Variant report

Variant	rs73285269
Chromosome Location	chr8:103427336-103427337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103425193..103428090-chr8:103658555..103660884,2	MCF-7	breast:
2	chr8:103420136..103427906-chr8:103815410..103825210,22	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253669	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56273032	0.96[EUR][1000 genomes]
rs58160045	0.96[EUR][1000 genomes]
rs73285260	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv891244	chr8:103309862-103483466	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
6	nsv1023938	chr8:103369215-103538708	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103425600-103427600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:103425600-103427800	Weak transcription	Fetal Intestine Large	intestine
3	chr8:103425600-103428600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr8:103425600-103429200	Weak transcription	Right Atrium	heart
5	chr8:103425600-103432600	Weak transcription	Left Ventricle	heart
6	chr8:103425800-103427400	Weak transcription	NHLF	lung
7	chr8:103425800-103427600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr8:103425800-103427800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr8:103425800-103428600	Enhancers	HepG2	liver
10	chr8:103425800-103428800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:103425800-103428800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr8:103425800-103428800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:103425800-103429200	Weak transcription	Placenta	Placenta
14	chr8:103425800-103434800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:103425800-103437800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr8:103425800-103439600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr8:103425800-103439600	Weak transcription	Fetal Stomach	stomach
18	chr8:103426000-103432200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:103426200-103439600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr8:103426400-103428200	Weak transcription	Primary B cells from peripheral blood	blood
21	chr8:103426400-103428600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr8:103426400-103434800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr8:103426600-103428000	Weak transcription	Primary B cells from cord blood	blood
24	chr8:103426600-103428200	Enhancers	GM12878-XiMat	blood
25	chr8:103426600-103429000	Enhancers	K562	blood

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