Variant report

Variant	rs2892872
Chromosome Location	chr4:120599873-120599874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10007021	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10012609	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10013319	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10015250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10024373	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034636	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11929853	1.00[EUR][1000 genomes]
rs11944683	1.00[EUR][1000 genomes]
rs11947667	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642764	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12643785	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12646486	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12648324	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12648560	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12711079	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13108160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13121100	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13132106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13137327	1.00[ASN][1000 genomes]
rs17005622	1.00[EUR][1000 genomes]
rs17005818	1.00[EUR][1000 genomes]
rs17005819	1.00[EUR][1000 genomes]
rs17051362	1.00[EUR][1000 genomes]
rs17051363	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17839126	1.00[EUR][1000 genomes]
rs2252946	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2253404	0.84[AFR][1000 genomes]
rs2253534	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389893	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2389894	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389895	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2389896	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389897	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2583607	1.00[EUR][1000 genomes]
rs2583613	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2583614	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2714962	0.84[AFR][1000 genomes]
rs2714974	1.00[EUR][1000 genomes]
rs2714982	1.00[EUR][1000 genomes]
rs2714983	1.00[EUR][1000 genomes]
rs2714986	1.00[EUR][1000 genomes]
rs2715017	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2715024	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2715025	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36100748	1.00[EUR][1000 genomes]
rs3775856	0.82[JPT][hapmap]
rs4146267	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4450908	1.00[EUR][1000 genomes]
rs4834796	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4834801	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5026501	0.81[AFR][1000 genomes]
rs58797432	1.00[EUR][1000 genomes]
rs59755197	1.00[EUR][1000 genomes]
rs6820878	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6821083	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6843112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6843408	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844603	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6844952	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7441168	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1010753	chr4:120429028-120684310	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537233	chr4:120429028-120684310	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1006572	chr4:120432494-120694243	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1802546	chr4:120558608-120675026	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1010638	chr4:120586178-120671835	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1009771	chr4:120590902-120665812	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120577600-120605000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:120599800-120600000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:120599800-120600000	Enhancers	Fetal Stomach	stomach
4	chr4:120599800-120600000	Active TSS	NHDF-Ad	bronchial
5	chr4:120599800-120600200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:120599800-120600200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:120599800-120600200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
8	chr4:120599800-120600200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:120599800-120600200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:120599800-120600200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:120599800-120600200	Flanking Active TSS	Fetal Lung	lung
12	chr4:120599800-120600200	Flanking Active TSS	Osteobl	bone
13	chr4:120599800-120600400	Weak transcription	Aorta	Aorta
14	chr4:120599800-120600400	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr4:120599800-120600400	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr4:120599800-120600400	Flanking Active TSS	NHLF	lung
17	chr4:120599800-120600600	Enhancers	NH-A	brain
18	chr4:120599800-120600800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:120599800-120600800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:120599800-120600800	Enhancers	Colon Smooth Muscle	Colon
21	chr4:120599800-120600800	Enhancers	Fetal Kidney	kidney
22	chr4:120599800-120605400	Enhancers	Rectal Smooth Muscle	rectum

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