Variant report

Variant	rs4450908
Chromosome Location	chr4:120695459-120695460
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:120692868..120695733-chr4:120948622..120950761,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10007021	1.00[EUR][1000 genomes]
rs10012609	1.00[EUR][1000 genomes]
rs10013319	1.00[EUR][1000 genomes]
rs10015250	1.00[EUR][1000 genomes]
rs10024373	1.00[EUR][1000 genomes]
rs10034636	1.00[EUR][1000 genomes]
rs11929853	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11944683	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11947667	1.00[EUR][1000 genomes]
rs12642764	1.00[EUR][1000 genomes]
rs12646486	1.00[EUR][1000 genomes]
rs12648324	1.00[EUR][1000 genomes]
rs12648560	1.00[EUR][1000 genomes]
rs12711079	1.00[EUR][1000 genomes]
rs13108160	1.00[EUR][1000 genomes]
rs13121100	1.00[EUR][1000 genomes]
rs13132106	1.00[EUR][1000 genomes]
rs17005622	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17005814	0.84[AFR][1000 genomes]
rs17005818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17005819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17051362	1.00[EUR][1000 genomes]
rs17051363	1.00[EUR][1000 genomes]
rs17839126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2252946	1.00[EUR][1000 genomes]
rs2253534	1.00[EUR][1000 genomes]
rs2389870	1.00[CHD][hapmap]
rs2389894	1.00[EUR][1000 genomes]
rs2389895	1.00[EUR][1000 genomes]
rs2389896	1.00[EUR][1000 genomes]
rs2389897	1.00[EUR][1000 genomes]
rs2583607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2583613	1.00[EUR][1000 genomes]
rs2583614	1.00[EUR][1000 genomes]
rs2714974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2714982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2714983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2714986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2715017	1.00[EUR][1000 genomes]
rs2715024	1.00[EUR][1000 genomes]
rs2715025	1.00[EUR][1000 genomes]
rs2892872	1.00[EUR][1000 genomes]
rs36100748	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4146267	1.00[EUR][1000 genomes]
rs4834796	1.00[EUR][1000 genomes]
rs4834801	1.00[EUR][1000 genomes]
rs58797432	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59755197	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6820878	1.00[EUR][1000 genomes]
rs6821083	1.00[EUR][1000 genomes]
rs6843112	1.00[EUR][1000 genomes]
rs6843408	1.00[EUR][1000 genomes]
rs6844952	1.00[EUR][1000 genomes]
rs7441168	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv966541	chr4:120671470-120702965	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120695000-120696000	Enhancers	Fetal Heart	heart
2	chr4:120695000-120696800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:120695200-120696000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:120695200-120696000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:120695200-120696800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr4:120695400-120696000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:120695400-120696400	Enhancers	HUES48 Cell Line	embryonic stem cell

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