Variant report

Variant	rs2893361
Chromosome Location	chr13:110767970-110767971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110761020..110763183-chr13:110765963..110768234,2	MCF-7	breast:
2	chr13:110445785..110447746-chr13:110765342..110767976,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COL4A1-3	chr13:110767286-110769562	l_918_chr13:110767285-110770858_testes

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs4771659	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4773126	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57770325	0.81[AFR][1000 genomes]
rs59891247	1.00[EUR][1000 genomes]
rs73622456	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73622462	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73622484	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73622487	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73622488	1.00[EUR][1000 genomes]
rs74124127	1.00[EUR][1000 genomes]
rs74124150	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901006	chr13:110748857-110806490	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv563099	chr13:110749252-110778894	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv456115	chr13:110756664-110806490	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv563100	chr13:110756664-110806490	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110763000-110772600	Weak transcription	Left Ventricle	heart
2	chr13:110763000-110775400	Weak transcription	HSMMtube	muscle
3	chr13:110765200-110768000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:110765200-110768000	Enhancers	HMEC	breast
5	chr13:110765200-110768400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr13:110765200-110768800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr13:110765200-110769400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr13:110765400-110768000	Enhancers	NHDF-Ad	bronchial
9	chr13:110765400-110768400	Enhancers	A549	lung
10	chr13:110765800-110775800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr13:110766000-110768000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr13:110766200-110772600	Weak transcription	Right Ventricle	heart
13	chr13:110766200-110773000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr13:110766400-110768400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr13:110766400-110769000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr13:110766600-110768400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr13:110766600-110772600	Weak transcription	GM12878-XiMat	blood
18	chr13:110766600-110775800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:110767000-110774800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr13:110767200-110769800	Weak transcription	NHEK	skin
21	chr13:110767200-110770200	Weak transcription	Adipose Nuclei	Adipose
22	chr13:110767400-110768800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr13:110767400-110772600	Weak transcription	NH-A	brain
24	chr13:110767600-110768000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr13:110767600-110768000	Bivalent Enhancer	Fetal Muscle Leg	muscle
26	chr13:110767600-110768800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr13:110767800-110768000	Bivalent Enhancer	Fetal Intestine Large	intestine
28	chr13:110767800-110768000	Enhancers	Lung	lung
29	chr13:110767800-110768000	Weak transcription	HSMM	muscle
30	chr13:110767800-110769200	Enhancers	Esophagus	oesophagus

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