Variant report

Variant	rs2893687
Chromosome Location	chr12:117102479-117102480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:117100993..117103339-chr12:117105815..117107705,2	K562	blood:
2	chr12:117094883..117097893-chr12:117100651..117103499,3	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1009981	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10850696	0.97[ASN][1000 genomes]
rs12422345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12424640	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4505161	0.97[ASN][1000 genomes]
rs7977117	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794859	chr12:117087267-117103935	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832523	chr12:117090343-117273810	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117096600-117103200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:117100600-117103800	Weak transcription	Left Ventricle	heart
3	chr12:117100800-117103000	Weak transcription	Right Ventricle	heart
4	chr12:117100800-117103400	Weak transcription	NHDF-Ad	bronchial
5	chr12:117101000-117103200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr12:117101000-117103200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:117101000-117103400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr12:117101000-117103600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr12:117101000-117103800	Weak transcription	Fetal Muscle Leg	muscle
10	chr12:117101200-117103000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr12:117101200-117103000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr12:117101200-117103000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr12:117101200-117103000	Weak transcription	Lung	lung
14	chr12:117101200-117103200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr12:117101200-117103200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr12:117101200-117103200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr12:117101200-117103200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr12:117101200-117103200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr12:117101200-117103200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr12:117101200-117103600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr12:117101200-117104200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr12:117101400-117102800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr12:117101600-117103000	Weak transcription	Adipose Nuclei	Adipose
24	chr12:117101600-117103400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr12:117101800-117103000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr12:117101800-117103200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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