Variant report

Variant	rs1009981
Chromosome Location	chr12:117103935-117103936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10850696	0.97[ASN][1000 genomes]
rs12422345	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12424640	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2893687	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4505161	0.97[ASN][1000 genomes]
rs60470796	0.87[EUR][1000 genomes]
rs60644212	0.87[EUR][1000 genomes]
rs7977117	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794859	chr12:117087267-117103935	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832523	chr12:117090343-117273810	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117101200-117104200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:117102800-117104400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:117102800-117104400	Enhancers	Fetal Muscle Trunk	muscle
4	chr12:117103000-117104200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr12:117103000-117104200	Enhancers	Primary hematopoietic stem cells	blood
6	chr12:117103000-117104400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr12:117103000-117104400	Enhancers	Adipose Nuclei	Adipose
8	chr12:117103000-117104600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:117103200-117104000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr12:117103200-117104200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr12:117103200-117104200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr12:117103200-117104200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr12:117103200-117104400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr12:117103200-117104400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr12:117103200-117104600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr12:117103200-117104600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr12:117103200-117104800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr12:117103400-117104200	Enhancers	NHDF-Ad	bronchial
19	chr12:117103400-117104400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr12:117103400-117104400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr12:117103400-117104600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr12:117103400-117104800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr12:117103600-117104000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr12:117103600-117104200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr12:117103600-117104400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr12:117103600-117104800	Enhancers	Lung	lung
27	chr12:117103800-117104200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr12:117103800-117104200	Enhancers	Fetal Muscle Leg	muscle
29	chr12:117103800-117104400	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links