Variant report

Variant	rs60644212
Chromosome Location	chr12:117105226-117105227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1009981	0.87[EUR][1000 genomes]
rs57743252	1.00[AMR][1000 genomes]
rs59120116	1.00[AMR][1000 genomes]
rs59252966	1.00[AMR][1000 genomes]
rs60470796	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832523	chr12:117090343-117273810	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117104200-117110000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:117104400-117106600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr12:117104400-117109000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr12:117104600-117106600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:117104800-117113800	Weak transcription	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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