Variant report

Variant	rs2894000
Chromosome Location	chr6:29944666-29944667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:118)
CpG islands
(count:61)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:118 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr6:29943993-29945799	SK-N-SH	brain:	n/a	n/a
2	SMARCB1	chr6:29943854-29945318	Hela-S3	cervix:	n/a	n/a
3	MAX	chr6:29944171-29945332	K562	blood:	n/a	chr6:29944813-29944823
4	EP300	chr6:29944433-29944736	GM12878	blood:	n/a	chr6:29944481-29944497 chr6:29944433-29944447
5	ELF1	chr6:29944144-29945134	GM12878	blood:	n/a	chr6:29944888-29944900
6	BHLHE40	chr6:29944278-29944666	GM12878	blood:	n/a	n/a
7	HEY1	chr6:29944238-29945258	HepG2	liver:	n/a	n/a
8	BATF	chr6:29944417-29944715	GM12878	blood:	n/a	chr6:29944577-29944586
9	JUN	chr6:29944104-29945453	K562	blood:	n/a	chr6:29944940-29944948
10	POLR2A	chr6:29944316-29945253	Hela-S3	cervix:	n/a	n/a
11	PAX5	chr6:29944323-29944865	GM12878	blood:	n/a	chr6:29944438-29944447
12	POLR2A	chr6:29944368-29945505	K562	blood:	n/a	n/a
13	SIN3AK20	chr6:29944653-29944987	SK-N-SH	brain:	n/a	n/a
14	UBTF	chr6:29944263-29945287	K562	blood:	n/a	n/a
15	MAX	chr6:29944175-29945335	K562	blood:	n/a	chr6:29944813-29944823
16	POLR2A	chr6:29944117-29945429	K562	blood:	n/a	n/a
17	POLR2A	chr6:29944653-29945222	MCF-7	breast:	n/a	n/a
18	MAZ	chr6:29944143-29945315	K562	blood:	n/a	chr6:29944813-29944823
19	HEY1	chr6:29944363-29945209	HepG2	liver:	n/a	n/a
20	MAX	chr6:29944293-29944676	A549	lung:	n/a	n/a
21	HMGN3	chr6:29944101-29945236	K562	blood:	n/a	n/a
22	POLR2A	chr6:29944368-29945154	HUVEC	blood vessel:	n/a	n/a
23	NFIC	chr6:29944239-29944769	GM12878	blood:	n/a	n/a
24	PAX5	chr6:29944290-29944716	GM12878	blood:	n/a	chr6:29944438-29944447
25	MAX	chr6:29944135-29944791	A549	lung:	n/a	n/a
26	MYC	chr6:29944211-29945354	K562	blood:	n/a	chr6:29944813-29944823
27	MAX	chr6:29944267-29945356	Hela-S3	cervix:	n/a	chr6:29944813-29944823
28	CBX3	chr6:29944146-29945325	K562	blood:	n/a	n/a
29	RAD21	chr6:29944268-29945199	HepG2	liver:	n/a	chr6:29944887-29944901
30	POLR2A	chr6:29944309-29945284	K562	blood:	n/a	n/a
31	TBP	chr6:29944199-29945309	K562	blood:	n/a	n/a
32	POLR2A	chr6:29944219-29945272	HepG2	liver:	n/a	n/a
33	POLR2A	chr6:29944400-29944781	GM12878	blood:	n/a	n/a
34	TCF7L2	chr6:29944423-29945239	PANC-1	pancreas:	n/a	n/a
35	POLR2A	chr6:29944256-29945308	Hela-S3	cervix:	n/a	n/a
36	POLR2A	chr6:29944190-29945261	K562	blood:	n/a	n/a
37	POLR2A	chr6:29944377-29945240	SK-N-MC	brain:	n/a	n/a
38	RAD21	chr6:29944272-29945144	IMR90	lung:	n/a	chr6:29944887-29944901
39	E2F6	chr6:29944117-29945339	K562	blood:	n/a	chr6:29944976-29944990
40	TAF1	chr6:29944321-29945245	HepG2	liver:	n/a	n/a
41	TCF12	chr6:29944401-29944832	GM12878	blood:	n/a	chr6:29944587-29944596
42	MYBL2	chr6:29944162-29945300	HepG2	liver:	n/a	n/a
43	SIN3AK20	chr6:29944348-29944669	HepG2	liver:	n/a	n/a
44	HA-E2F1	chr6:29944076-29945278	MCF-7	breast:	n/a	chr6:29944976-29944990
45	TAF1	chr6:29944354-29944670	Hela-S3	cervix:	n/a	n/a
46	REST	chr6:29944614-29945250	HepG2	liver:	n/a	chr6:29944862-29944875 chr6:29944765-29944775 chr6:29945074-29945084 chr6:29944783-29944796
47	TEAD4	chr6:29944356-29944912	H1-hESC	embryonic stem cell:	n/a	n/a
48	UBTF	chr6:29944099-29945305	K562	blood:	n/a	n/a
49	POLR2A	chr6:29944413-29945272	PFSK-1	brain:	n/a	n/a
50	TFAP2C	chr6:29944316-29945510	Hela-S3	cervix:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:29944636-29944686	MCF10A-Er-Src	breast:	n/a
2	chr6:29944636-29944686	NT2-D1	testis:	n/a
3	chr6:29944636-29944686	NHDF-neo	bronchial:	n/a
4	chr6:29944636-29944686	GM06990	blood:	n/a
5	chr6:29944636-29944686	HRE	kidney:	n/a
6	chr6:29944636-29944686	AG04450	lung:	fetal
7	chr6:29944636-29944686	H1-hESC	embryonic stem cell:	embryo
8	chr6:29944636-29944686	AG04449	skin:	fetal
9	chr6:29944636-29944686	AoSMC	blood vessel:	n/a
10	chr6:29944636-29944686	HepG2	liver:	n/a
11	chr6:29944636-29944686	PFSK-1	brain:	n/a
12	chr6:29944636-29944686	HMEC	breast:	n/a
13	chr6:29944636-29944686	CMK	blood:	n/a
14	chr6:29944636-29944686	GM19239	blood:	n/a
15	chr6:29944636-29944686	SK-N-SH_RA	brain:	n/a
16	chr6:29944636-29944686	HCM	heart:	n/a
17	chr6:29944636-29944686	Jurkat	blood:	n/a
18	chr6:29944636-29944686	SAEC	small airway:	n/a
19	chr6:29944636-29944686	T-47D	breast:	n/a
20	chr6:29944636-29944686	HCT-116	colon:	n/a
21	chr6:29944636-29944686	PrEC	prostate:	n/a
22	chr6:29944636-29944686	BE2_C	brain:	n/a
23	chr6:29944636-29944686	RPTEC	kidney:	n/a
24	chr6:29944636-29944686	A549	lung:	n/a
25	chr6:29944636-29944686	HCPEpiC	choroid plexus:	n/a
26	chr6:29944636-29944686	BJ	skin:	n/a
27	chr6:29944636-29944686	NB4	blood:	n/a
28	chr6:29944636-29944686	SK-N-SH	brain:	n/a
29	chr6:29944636-29944686	AG10803	skin:	n/a
30	chr6:29944636-29944686	U87	brain:	n/a
31	chr6:29944636-29944686	GM12892	blood:	n/a
32	chr6:29944636-29944686	SKMC	muscle:	n/a
33	chr6:29944636-29944686	ovcar-3	ovarian:	n/a
34	chr6:29944636-29944686	NHBE	bronchial:	n/a
35	chr6:29944636-29944686	HCF	heart:	n/a
36	chr6:29944636-29944686	NH-A	brain:	n/a
37	chr6:29944636-29944686	Hela-S3	cervix:	n/a
38	chr6:29944636-29944686	HEK293	kidney:	embryo
39	chr6:29944636-29944686	LNCaP	prostate:	n/a
40	chr6:29944636-29944686	HPAEpiC	pulmonary alveolar:	n/a
41	chr6:29944636-29944686	ProgFib	skin:	n/a
42	chr6:29944636-29944686	HEEpiC	esophagus:	n/a
43	chr6:29944636-29944686	IMR90	lung:	fetal
44	chr6:29944636-29944686	PANC-1	pancreas:	n/a
45	chr6:29944636-29944686	GM12878	blood:	n/a
46	chr6:29944636-29944686	HRPEpiC	eye:	n/a
47	chr6:29944636-29944686	K562	blood:	n/a
48	chr6:29944636-29944686	HAEpiC	amniotic membrane:	n/a
49	chr6:29944636-29944686	HUVEC	blood vessel:	n/a
50	chr6:29944636-29944686	Caco-2	colon:	n/a

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:29943013..29944901-chr6:29959011..29961264,2	K562	blood:
2	chr6:29855991..29858588-chr6:29944087..29945954,2	MCF-7	breast:
3	chr6:29933916..29936718-chr6:29943405..29945040,3	MCF-7	breast:
4	chr6:29943470..29945184-chr6:29952031..29954167,2	K562	blood:
5	chr6:29944347..29945086-chr6:31367409..31368386,2	MCF-7	breast:

No data

Variant related genes	Relation type
MICD	TF binding region
HCG9	TF binding region
HCG9	CpG island
MICD	CpG island
ENSG00000230521	Chromatin interaction
ENSG00000238024	Chromatin interaction

Extended variants
information (count: 233 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:210)

rs_ID	r²[population]
rs1245367	0.81[AFR][1000 genomes]
rs2107201	0.81[AFR][1000 genomes]
rs2158288	0.81[AFR][1000 genomes]
rs2158289	0.81[AFR][1000 genomes]
rs2232239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275853	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3734832	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734836	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3757332	0.81[AFR][1000 genomes]
rs3807030	0.81[AFR][1000 genomes]
rs3807036	0.81[AFR][1000 genomes]
rs3823364	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3823372	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3823384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3891156	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3891157	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3901554	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60466513	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6903621	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6904120	0.80[EUR][1000 genomes]
rs6904969	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6912454	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6919438	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6920254	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6923832	0.81[AFR][1000 genomes]
rs6924054	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6924097	0.80[EUR][1000 genomes]
rs6924273	0.81[AMR][1000 genomes]
rs6925061	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6925856	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7770505	0.81[AFR][1000 genomes]
rs7771476	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7771672	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9260391	0.92[AMR][1000 genomes]
rs9260497	0.92[AMR][1000 genomes]
rs9260569	0.92[AMR][1000 genomes]
rs9260672	0.82[EUR][1000 genomes]
rs9260693	0.82[EUR][1000 genomes]
rs9260717	0.82[EUR][1000 genomes]
rs9260718	0.82[EUR][1000 genomes]
rs9260720	0.84[EUR][1000 genomes]
rs9260733	0.92[EUR][1000 genomes]
rs9260736	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9260768	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9260828	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260837	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260860	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260861	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260862	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9260863	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260864	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260865	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260867	0.92[EUR][1000 genomes]
rs9260868	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260869	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260870	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260871	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9260872	0.85[EUR][1000 genomes]
rs9260909	0.88[ASN][1000 genomes]
rs9260914	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260915	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9260916	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260917	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260918	0.93[ASN][1000 genomes]
rs9260919	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260921	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260923	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260929	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260930	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260931	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260932	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260933	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260934	0.81[EUR][1000 genomes]
rs9260935	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9260936	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9260938	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9260939	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9260941	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9260943	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9260946	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9260948	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9260950	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9260954	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9260957	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9260958	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9260976	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9260981	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9260984	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9260986	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9260993	0.81[ASN][1000 genomes]
rs9260998	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261005	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261025	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261027	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9261028	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261029	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261032	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261034	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261035	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261036	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261037	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261040	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261041	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261042	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261043	0.88[ASN][1000 genomes]
rs9261044	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261045	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261046	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261056	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261058	0.81[AFR][1000 genomes]
rs9261059	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261063	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261064	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261065	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261066	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261068	0.88[ASN][1000 genomes]
rs9261069	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261070	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261071	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9261072	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9261073	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9261075	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261076	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261079	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261080	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261082	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261083	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261084	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261085	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261086	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261087	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261088	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261089	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261090	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261091	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261093	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261094	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261095	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261096	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261099	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261108	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261109	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261114	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261118	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261130	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9261131	0.85[ASN][1000 genomes]
rs9261132	0.85[ASN][1000 genomes]
rs9261133	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261138	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261141	0.85[ASN][1000 genomes]
rs9261146	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261147	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261151	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261156	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261158	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261159	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261160	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261169	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261171	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261175	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261176	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261177	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261179	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261184	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261191	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261193	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261203	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261207	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9261213	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261214	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261218	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261219	0.85[ASN][1000 genomes]
rs9261220	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261223	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261226	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261242	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9261248	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9261250	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9261253	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9261257	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9261263	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9261264	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9261265	0.81[AFR][1000 genomes]
rs9261271	0.81[AFR][1000 genomes]
rs9261276	0.81[AFR][1000 genomes]
rs9261284	0.81[AFR][1000 genomes]
rs9261285	0.81[AFR][1000 genomes]
rs9261286	0.81[AFR][1000 genomes]
rs9261287	0.81[AFR][1000 genomes]
rs9261296	0.81[AFR][1000 genomes]
rs9261312	0.81[AFR][1000 genomes]
rs9261314	0.81[AFR][1000 genomes]
rs9261315	0.81[AFR][1000 genomes]
rs9261316	0.81[AFR][1000 genomes]
rs9261317	0.81[AFR][1000 genomes]
rs9261359	0.81[AFR][1000 genomes]
rs9261360	0.81[AFR][1000 genomes]
rs9261361	0.81[AFR][1000 genomes]
rs9261364	0.81[AFR][1000 genomes]
rs9261365	0.81[AFR][1000 genomes]
rs9261367	0.81[AFR][1000 genomes]
rs9261369	0.81[AFR][1000 genomes]
rs9261372	0.81[AFR][1000 genomes]
rs9261374	0.81[AFR][1000 genomes]
rs9261377	0.81[AFR][1000 genomes]
rs9261379	0.81[AFR][1000 genomes]
rs9261381	0.81[AFR][1000 genomes]
rs9261382	0.81[AFR][1000 genomes]
rs9261386	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv3332677	chr6:29733187-29961463	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3430372	chr6:29759523-29974277	Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758040	chr6:29792434-29975144	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	esv2759412	chr6:29792434-29975144	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	esv3391180	chr6:29798321-29977430	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	esv1845786	chr6:29817123-29955129	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	esv1848127	chr6:29817323-29966451	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv508398	chr6:29825777-30003403	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	esv3369212	chr6:29827361-29960177	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	esv2757159	chr6:29834472-29965501	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
12	esv3376588	chr6:29834667-29964324	Genic enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
13	nsv10810	chr6:29837465-29961415	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
14	nsv870444	chr6:29842885-29949545	Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
15	esv3373906	chr6:29884407-29977070	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
16	esv2641340	chr6:29913287-29978544	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
17	esv3378806	chr6:29913464-29978179	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
18	esv3496792	chr6:29913818-29977071	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
19	esv3496793	chr6:29913818-29977071	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
20	nsv1031115	chr6:29934199-30058223	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
21	nsv538172	chr6:29934199-30058223	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
22	esv1799283	chr6:29938777-29959935	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
23	esv3350882	chr6:29942373-29945471	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29935600-29944800	Weak transcription	Dnd41	blood
2	chr6:29942600-29945200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr6:29942600-29945400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:29942600-29945400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:29942800-29945400	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr6:29943200-29945400	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
7	chr6:29943200-29945400	Active TSS	Psoas Muscle	Psoas
8	chr6:29943600-29945200	Active TSS	Pancreas	Pancrea
9	chr6:29944000-29945000	Active TSS	Left Ventricle	heart
10	chr6:29944000-29945000	Active TSS	Sigmoid Colon	Sigmoid Colon
11	chr6:29944000-29945200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:29944000-29945200	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr6:29944000-29945200	Active TSS	Right Ventricle	heart
14	chr6:29944000-29945200	Active TSS	Stomach Mucosa	stomach
15	chr6:29944000-29945400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:29944000-29945400	Active TSS	Brain Angular Gyrus	brain
17	chr6:29944000-29945400	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr6:29944000-29945400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:29944000-29945400	Active TSS	Colon Smooth Muscle	Colon
20	chr6:29944000-29945400	Active TSS	Right Atrium	heart
21	chr6:29944000-29945400	Flanking Active TSS	HMEC	breast
22	chr6:29944000-29945400	Active TSS	HSMM	muscle
23	chr6:29944000-29945400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
24	chr6:29944200-29945000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
25	chr6:29944200-29945000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:29944200-29945000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
27	chr6:29944200-29945200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
28	chr6:29944200-29945200	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:29944200-29945200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:29944200-29945200	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
31	chr6:29944200-29945200	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
32	chr6:29944200-29945200	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
33	chr6:29944200-29945200	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
34	chr6:29944200-29945200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
35	chr6:29944200-29945200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:29944200-29945200	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
37	chr6:29944200-29945200	Active TSS	Aorta	Aorta
38	chr6:29944200-29945200	Active TSS	Colonic Mucosa	Colon
39	chr6:29944200-29945200	Flanking Bivalent TSS/Enh	Placenta	Placenta
40	chr6:29944200-29945200	Active TSS	Gastric	stomach
41	chr6:29944200-29945200	Active TSS	Small Intestine	intestine
42	chr6:29944200-29945200	Active TSS	A549	lung
43	chr6:29944200-29945200	Bivalent/Poised TSS	GM12878-XiMat	blood
44	chr6:29944200-29945400	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
45	chr6:29944200-29945400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr6:29944200-29945400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:29944200-29945400	Active TSS	Rectal Smooth Muscle	rectum
48	chr6:29944200-29945400	Active TSS	NHDF-Ad	bronchial
49	chr6:29944200-29945600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
50	chr6:29944400-29944800	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood

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