Variant report

Variant	rs9260733
Chromosome Location	chr6:29932433-29932434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:29931653..29934276-chr6:29943760..29946372,5	K562	blood:
2	chr6:29917413..29919975-chr6:29932108..29934788,2	K562	blood:
3	chr6:29927397..29931336-chr6:29932208..29936273,8	K562	blood:
4	chr6:29931972..29934794-chr6:30027595..30029471,2	K562	blood:
5	chr6:29892582..29894711-chr6:29932418..29935205,2	K562	blood:
6	chr14:77247003..77248532-chr6:29931290..29933642,2	K562	blood:
7	chr6:29929604..29934270-chr6:29942846..29948120,6	K562	blood:
8	chr6:29931492..29933251-chr6:30034694..30036479,2	K562	blood:
9	chr6:29932263..29935141-chr6:29936079..29939709,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000066379	Chromatin interaction
ENSG00000204625	Chromatin interaction
ENSG00000204619	Chromatin interaction
ENSG00000230795	Chromatin interaction
ENSG00000259081	Chromatin interaction
ENSG00000204623	Chromatin interaction

Extended variants
information (count: 180 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs2232239	0.92[EUR][1000 genomes]
rs2894000	0.92[EUR][1000 genomes]
rs3734832	0.87[EUR][1000 genomes]
rs3823364	0.92[EUR][1000 genomes]
rs3823372	0.92[EUR][1000 genomes]
rs3823384	0.92[EUR][1000 genomes]
rs3901554	0.87[EUR][1000 genomes]
rs9259916	1.00[JPT][hapmap]
rs9260391	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9260497	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9260569	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9260638	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9260642	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9260672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9260693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260717	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9260718	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9260720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260729	0.80[ASN][1000 genomes]
rs9260736	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260768	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9260828	0.92[EUR][1000 genomes]
rs9260830	0.92[EUR][1000 genomes]
rs9260837	0.92[EUR][1000 genomes]
rs9260860	0.92[EUR][1000 genomes]
rs9260861	0.92[EUR][1000 genomes]
rs9260862	0.83[EUR][1000 genomes]
rs9260863	0.92[EUR][1000 genomes]
rs9260864	0.90[EUR][1000 genomes]
rs9260865	0.92[EUR][1000 genomes]
rs9260867	0.85[EUR][1000 genomes]
rs9260868	0.84[EUR][1000 genomes]
rs9260869	0.89[EUR][1000 genomes]
rs9260870	0.92[EUR][1000 genomes]
rs9260871	0.84[EUR][1000 genomes]
rs9260914	0.87[EUR][1000 genomes]
rs9260916	0.81[EUR][1000 genomes]
rs9260917	0.87[EUR][1000 genomes]
rs9260919	0.87[EUR][1000 genomes]
rs9260921	0.87[EUR][1000 genomes]
rs9260923	0.87[EUR][1000 genomes]
rs9260929	0.87[EUR][1000 genomes]
rs9260930	0.87[EUR][1000 genomes]
rs9260931	0.87[EUR][1000 genomes]
rs9260932	0.87[EUR][1000 genomes]
rs9260933	0.87[EUR][1000 genomes]
rs9260935	0.84[EUR][1000 genomes]
rs9260936	0.84[EUR][1000 genomes]
rs9260938	0.84[EUR][1000 genomes]
rs9260939	0.84[EUR][1000 genomes]
rs9260941	0.84[EUR][1000 genomes]
rs9260943	0.84[EUR][1000 genomes]
rs9260946	0.84[EUR][1000 genomes]
rs9260948	0.84[EUR][1000 genomes]
rs9260950	0.84[EUR][1000 genomes]
rs9260954	0.84[EUR][1000 genomes]
rs9260957	0.84[EUR][1000 genomes]
rs9260958	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:122 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv3441842	chr6:29715749-29942950	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	esv3332677	chr6:29733187-29961463	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	esv3430372	chr6:29759523-29974277	Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv2758040	chr6:29792434-29975144	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	esv2759412	chr6:29792434-29975144	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	esv3391180	chr6:29798321-29977430	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	esv1845786	chr6:29817123-29955129	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
9	esv1848127	chr6:29817323-29966451	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
10	nsv508398	chr6:29825777-30003403	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	esv3369212	chr6:29827361-29960177	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
12	esv32544	chr6:29831716-29944103	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	esv2757159	chr6:29834472-29965501	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
14	esv3376588	chr6:29834667-29964324	Genic enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
15	esv2761013	chr6:29837072-29937311	Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
16	nsv10810	chr6:29837465-29961415	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
17	nsv870444	chr6:29842885-29949545	Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
18	nsv533601	chr6:29854899-29937583	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
19	nsv432860	chr6:29859221-29938821	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
20	nsv462733	chr6:29859517-29937833	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
21	nsv601331	chr6:29859517-29937833	Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
22	nsv1017458	chr6:29871636-29937262	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
23	esv2754059	chr6:29871636-29938777	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
24	nsv1029092	chr6:29876959-29937262	Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
25	esv3373906	chr6:29884407-29977070	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
26	esv994074	chr6:29911066-29937907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
27	esv2641340	chr6:29913287-29978544	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
28	esv3378806	chr6:29913464-29978179	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
29	esv3496792	chr6:29913818-29977071	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
30	esv3496793	chr6:29913818-29977071	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
31	nsv883968	chr6:29916618-29936194	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
32	nsv883969	chr6:29916618-29937127	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
33	nsv883970	chr6:29916618-29937541	Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
34	nsv883971	chr6:29916618-29937833	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
35	nsv883972	chr6:29916618-29937924	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
36	nsv470807	chr6:29916618-29939240	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
37	esv2421556	chr6:29916855-29937833	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
38	esv3473881	chr6:29916964-29938022	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
39	esv3473882	chr6:29916964-29938022	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
40	esv3692892	chr6:29917439-29937833	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
41	nsv883974	chr6:29917503-29937740	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
42	nsv883975	chr6:29917503-29937833	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
43	nsv883976	chr6:29917503-29937924	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
44	nsv883978	chr6:29917591-29937541	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
45	nsv883979	chr6:29917591-29937924	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
46	nsv517134	chr6:29918099-29937833	Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
47	nsv462734	chr6:29918099-29937833	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
48	nsv462735	chr6:29918099-29937833	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
49	nsv601468	chr6:29918099-29937833	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
50	nsv883981	chr6:29918198-29937740	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9260733	C6orf12	Cis_1M	lymphoblastoid	RTeQTL
rs9260733	HLA-A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29913400-29932600	Weak transcription	Brain Substantia Nigra	brain
2	chr6:29916800-29933000	Weak transcription	Esophagus	oesophagus
3	chr6:29916800-29933000	Weak transcription	Pancreas	Pancrea
4	chr6:29916800-29933200	Weak transcription	Lung	lung
5	chr6:29916800-29940200	Weak transcription	Gastric	stomach
6	chr6:29924800-29933000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:29926200-29932600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:29927800-29938800	Weak transcription	Spleen	Spleen
9	chr6:29931800-29932800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:29931800-29932800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:29932000-29932600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:29932000-29932600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:29932000-29932800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:29932000-29932800	Enhancers	NHDF-Ad	bronchial
15	chr6:29932000-29934200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:29932200-29932600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr6:29932200-29932600	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:29932200-29932600	Enhancers	H9 Cell Line	embryonic stem cell
19	chr6:29932200-29932600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:29932200-29932600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr6:29932200-29932600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:29932200-29932600	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr6:29932200-29932600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:29932200-29932600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:29932200-29932600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:29932200-29932600	Enhancers	Liver	Liver
27	chr6:29932200-29932600	Enhancers	Brain Anterior Caudate	brain
28	chr6:29932200-29932600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:29932200-29932600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr6:29932200-29932600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr6:29932200-29932600	Enhancers	Stomach Smooth Muscle	stomach
32	chr6:29932200-29932600	Flanking Active TSS	A549	lung
33	chr6:29932200-29932600	Flanking Active TSS	GM12878-XiMat	blood
34	chr6:29932200-29932600	Flanking Active TSS	HepG2	liver
35	chr6:29932200-29932600	Enhancers	HSMM	muscle
36	chr6:29932200-29932600	Flanking Active TSS	HSMMtube	muscle
37	chr6:29932200-29932600	Flanking Active TSS	K562	blood
38	chr6:29932200-29932600	Enhancers	NHLF	lung
39	chr6:29932200-29932600	Enhancers	Osteobl	bone
40	chr6:29932200-29932800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr6:29932200-29932800	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr6:29932200-29932800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:29932200-29932800	Enhancers	Primary T cells fromperipheralblood	blood
44	chr6:29932200-29932800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr6:29932200-29932800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
46	chr6:29932200-29932800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:29932200-29932800	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr6:29932200-29932800	Enhancers	Colonic Mucosa	Colon
49	chr6:29932200-29932800	Enhancers	Fetal Heart	heart
50	chr6:29932200-29932800	Enhancers	Fetal Intestine Large	intestine

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