Variant report

Variant	rs2894065
Chromosome Location	chr6:28839921-28839922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28839561..28841445-chr6:28847858..28849885,2	MCF-7	breast:
2	chr6:28838242..28841047-chr6:28977615..28980299,2	MCF-7	breast:
3	chr6:28838539..28840180-chr6:28842069..28844345,2	MCF-7	breast:
4	chr6:28834360..28837411-chr6:28839003..28841254,4	K562	blood:
5	chr6:28828478..28839935-chr6:28855092..28866386,31	K562	blood:
6	chr6:28839238..28840855-chr6:28862769..28865736,2	MCF-7	breast:
7	chr6:28838562..28840707-chr6:28844607..28847429,2	K562	blood:
8	chr6:28833354..28837219-chr6:28837839..28842041,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000224157	Chromatin interaction
ENSG00000233366	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1041881	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1056032	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12194037	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2071786	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2071787	0.87[EUR][1000 genomes]
rs2071788	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28531681	0.83[EUR][1000 genomes]
rs3763338	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3763339	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4713180	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4713182	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713183	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4713184	0.87[EUR][1000 genomes]
rs4713191	0.91[EUR][1000 genomes]
rs4713195	0.82[EUR][1000 genomes]
rs4713196	0.82[EUR][1000 genomes]
rs4947256	0.89[EUR][1000 genomes]
rs58958115	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61751894	0.88[EUR][1000 genomes]
rs6928948	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72853516	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72853522	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72853523	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72860085	0.84[EUR][1000 genomes]
rs72860099	0.87[EUR][1000 genomes]
rs72862420	0.89[EUR][1000 genomes]
rs72862423	0.89[EUR][1000 genomes]
rs73741203	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs743848	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745220	0.89[EUR][1000 genomes]
rs880157	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9295782	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9366731	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9366733	0.83[EUR][1000 genomes]
rs9380098	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9380100	0.89[EUR][1000 genomes]
rs9380102	0.84[EUR][1000 genomes]
rs9380103	0.83[EUR][1000 genomes]
rs968723	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883518	chr6:28792477-28911802	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
3	nsv883519	chr6:28792477-28936556	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
4	nsv427748	chr6:28831888-28999434	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
5	nsv601212	chr6:28833225-28893927	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	nsv462667	chr6:28834646-28893927	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	esv12675	chr6:28839161-28839940	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28837800-28841800	Weak transcription	Thymus	Thymus
2	chr6:28839600-28840000	Enhancers	HepG2	liver
3	chr6:28839800-28843200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:28839800-28843400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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