Variant report

Variant	rs4713180
Chromosome Location	chr6:28781277-28781278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28774872..28779186-chr6:28780865..28786550,9	K562	blood:
2	chr6:28723977..28727923-chr6:28779903..28783132,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1041881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1056032	0.82[EUR][1000 genomes]
rs12194037	0.84[EUR][1000 genomes]
rs2071786	0.84[EUR][1000 genomes]
rs2071787	0.81[EUR][1000 genomes]
rs2071788	0.84[EUR][1000 genomes]
rs2894065	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3763338	0.81[EUR][1000 genomes]
rs3763339	0.84[EUR][1000 genomes]
rs4713182	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4713183	0.87[EUR][1000 genomes]
rs4713184	0.81[EUR][1000 genomes]
rs4713191	0.82[EUR][1000 genomes]
rs4947256	0.80[EUR][1000 genomes]
rs57558053	0.81[ASN][1000 genomes]
rs58958115	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67829526	0.80[ASN][1000 genomes]
rs72853516	0.82[EUR][1000 genomes]
rs72853522	0.83[EUR][1000 genomes]
rs72853523	0.81[EUR][1000 genomes]
rs72860099	0.81[EUR][1000 genomes]
rs72862420	0.80[EUR][1000 genomes]
rs72862423	0.80[EUR][1000 genomes]
rs73741203	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs743848	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7745220	0.80[EUR][1000 genomes]
rs880157	0.85[ASN][1000 genomes]
rs9295782	0.81[EUR][1000 genomes]
rs9366731	0.81[EUR][1000 genomes]
rs9380098	0.81[EUR][1000 genomes]
rs9380100	0.80[EUR][1000 genomes]
rs9380102	0.81[EUR][1000 genomes]
rs9468423	0.80[ASN][1000 genomes]
rs968723	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv9558	chr6:28770281-28785058	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3410540	chr6:28770455-28785112	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3322630	chr6:28770519-28785092	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3486939	chr6:28770525-28785051	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3486940	chr6:28770525-28785051	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3403106	chr6:28770790-28785189	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv970724	chr6:28778144-28784760	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28778200-28781600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:28780000-28781800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:28780000-28782600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:28780200-28781800	Weak transcription	K562	blood
5	chr6:28780600-28782800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr6:28780800-28781400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr6:28780800-28781400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
8	chr6:28780800-28781800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:28780800-28782200	Bivalent/Poised TSS	NHEK	skin
10	chr6:28780800-28782600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr6:28781000-28781400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
12	chr6:28781000-28781800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:28781000-28781800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:28781200-28781400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
15	chr6:28781200-28781400	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:28781200-28781600	Weak transcription	HMEC	breast
17	chr6:28781200-28781800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
18	chr6:28781200-28782600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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