Variant report

Variant	rs67829526
Chromosome Location	chr6:28781873-28781874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28774872..28779186-chr6:28780865..28786550,9	K562	blood:
2	chr6:28723977..28727923-chr6:28779903..28783132,3	K562	blood:
3	chr6:27112538..27114831-chr6:28781719..28783622,2	K562	blood:

Variant related genes	Relation type
ENSG00000197903	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1041881	0.80[ASN][1000 genomes]
rs4713180	0.80[ASN][1000 genomes]
rs6456865	0.81[EUR][1000 genomes]
rs6456866	0.88[EUR][1000 genomes]
rs6904278	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73408958	0.88[EUR][1000 genomes]
rs763007	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7746064	0.88[EUR][1000 genomes]
rs9468423	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv9558	chr6:28770281-28785058	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3410540	chr6:28770455-28785112	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3322630	chr6:28770519-28785092	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3486939	chr6:28770525-28785051	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3486940	chr6:28770525-28785051	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3403106	chr6:28770790-28785189	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv970724	chr6:28778144-28784760	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28780000-28782600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:28780600-28782800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr6:28780800-28782200	Bivalent/Poised TSS	NHEK	skin
4	chr6:28780800-28782600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:28781200-28782600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr6:28781400-28782400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:28781400-28782600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
8	chr6:28781400-28782600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
9	chr6:28781600-28782200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
10	chr6:28781600-28782200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:28781600-28782400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr6:28781600-28782400	Bivalent/Poised TSS	NHLF	lung
13	chr6:28781800-28782000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:28781800-28782000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
15	chr6:28781800-28782000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:28781800-28782000	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:28781800-28782000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:28781800-28782000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:28781800-28782000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:28781800-28782000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr6:28781800-28782000	Bivalent Enhancer	Fetal Stomach	stomach
22	chr6:28781800-28782000	Bivalent/Poised TSS	Psoas Muscle	Psoas
23	chr6:28781800-28782000	Bivalent Enhancer	GM12878-XiMat	blood
24	chr6:28781800-28782000	Flanking Bivalent TSS/Enh	HSMM	muscle
25	chr6:28781800-28782000	Bivalent Enhancer	HUVEC	blood vessel
26	chr6:28781800-28782000	Active TSS	K562	blood
27	chr6:28781800-28782200	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:28781800-28782200	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:28781800-28782200	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:28781800-28782200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:28781800-28782200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:28781800-28782200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:28781800-28782200	Bivalent Enhancer	Brain Hippocampus Middle	brain
34	chr6:28781800-28782200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
35	chr6:28781800-28782200	Flanking Bivalent TSS/Enh	Placenta	Placenta
36	chr6:28781800-28782200	Bivalent Enhancer	Stomach Mucosa	stomach
37	chr6:28781800-28782200	Bivalent/Poised TSS	Osteobl	bone
38	chr6:28781800-28782400	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:28781800-28782400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:28781800-28782400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:28781800-28782400	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:28781800-28782400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr6:28781800-28782400	Flanking Bivalent TSS/Enh	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:28781800-28782400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
45	chr6:28781800-28782400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
46	chr6:28781800-28782400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
47	chr6:28781800-28782400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
48	chr6:28781800-28782400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
49	chr6:28781800-28782400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
50	chr6:28781800-28782400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links