Variant report

Variant	rs763007
Chromosome Location	chr6:28829309-28829310
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28827198..28830005-chr6:28973058..28974944,2	K562	blood:
2	chr6:28806019..28808869-chr6:28827811..28829720,2	K562	blood:
3	chr6:28828478..28839935-chr6:28855092..28866386,31	K562	blood:
4	chr6:28806762..28809202-chr6:28828058..28830893,2	MCF-7	breast:
5	chr6:28823126..28835109-chr6:28859268..28867076,23	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM27-3	chr6:28827402-28829792	ENSG00000225595
2	lnc-TRIM27-3	chr6:28828927-28829792	ENSG00000225595.2
3	lnc-TRIM27-3	chr6:28827402-28829792	NONHSAT108488

No data

No data

Variant related genes	Relation type
ENSG00000233366	Chromatin interaction
ENSG00000224157	Chromatin interaction
ENSG00000225173	Chromatin interaction
ENSG00000197935	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs6456865	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6456866	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67829526	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6904278	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928948	0.82[EUR][1000 genomes]
rs6936343	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73408958	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7746064	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs880157	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9468423	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9468458	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883518	chr6:28792477-28911802	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
3	nsv883519	chr6:28792477-28936556	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
4	esv3403240	chr6:28808022-28832799	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28825400-28830200	Weak transcription	K562	blood
2	chr6:28828200-28829600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:28828400-28830800	Weak transcription	Primary T cells from cord blood	blood
4	chr6:28828800-28829400	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:28828800-28829800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:28829000-28830000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:28829200-28829400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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