Variant report

Variant	rs28947200
Chromosome Location	chr2:113676183-113676184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13007595	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs28947196	1.00[AFR][1000 genomes]
rs3783531	1.00[MEX][hapmap]
rs6707930	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961338	chr2:113657963-113691422	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1003372	chr2:113670890-113682621	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113664800-113678000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:113671600-113683000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:113672600-113677800	Enhancers	Fetal Intestine Small	intestine
4	chr2:113672800-113677600	Enhancers	Fetal Intestine Large	intestine
5	chr2:113674200-113679400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr2:113674400-113678400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr2:113674400-113683000	Weak transcription	Gastric	stomach
8	chr2:113674600-113678400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr2:113674800-113677000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr2:113674800-113678400	Weak transcription	Primary T cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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