Variant report

Variant	rs3783531
Chromosome Location	chr2:113539246-113539247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13007595	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs28947200	1.00[MEX][hapmap]
rs6707930	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428724	chr2:113376894-113555421	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1010106	chr2:113394981-113556071	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113522800-113541600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:113530200-113541200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:113534000-113551800	Weak transcription	Fetal Heart	heart
4	chr2:113535400-113540200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:113535400-113540400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:113535400-113540800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr2:113535600-113540800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:113535600-113541200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr2:113536600-113541600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:113537600-113541600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:113538400-113540800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr2:113538800-113540800	Transcr. at gene 5' and 3'	HMEC	breast
13	chr2:113538800-113541400	Enhancers	Primary B cells from peripheral blood	blood
14	chr2:113538800-113542000	Transcr. at gene 5' and 3'	NHEK	skin
15	chr2:113539000-113540800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr2:113539000-113541000	Weak transcription	K562	blood
17	chr2:113539000-113541600	Transcr. at gene 5' and 3'	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:113539200-113539400	Enhancers	Hela-S3	cervix
19	chr2:113539200-113540600	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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