Variant report

Variant	rs2896414
Chromosome Location	chr7:128888544-128888545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:128886315..128888707-chr7:128895408..128897456,2	K562	blood:
2	chr7:128887131..128889501-chr7:128893750..128895547,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10235589	0.89[AFR][1000 genomes]
rs10255583	0.84[AFR][1000 genomes]
rs10264209	0.81[LWK][hapmap];0.82[YRI][hapmap]
rs10269495	0.89[AFR][1000 genomes]
rs10281269	1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs12533108	0.89[AFR][1000 genomes]
rs13240723	0.87[YRI][hapmap]
rs1405475	0.92[AFR][1000 genomes]
rs1526898	0.97[AFR][1000 genomes]
rs1526899	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs1549788	0.92[AFR][1000 genomes]
rs1609043	0.92[AFR][1000 genomes]
rs1991645	0.95[AFR][1000 genomes]
rs2402946	0.95[AFR][1000 genomes]
rs2402947	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2566875	0.92[AFR][1000 genomes]
rs2566881	1.00[MEX][hapmap];0.87[YRI][hapmap]
rs2566882	0.85[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.87[YRI][hapmap]
rs2694570	0.84[AFR][1000 genomes]
rs2694575	0.91[AFR][1000 genomes]
rs2694576	0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.87[YRI][hapmap]
rs2694583	0.95[YRI][hapmap];0.92[AFR][1000 genomes]
rs2694591	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs2718085	0.94[AFR][1000 genomes]
rs2718090	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2718091	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2718092	0.83[AFR][1000 genomes]
rs2718097	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs2718100	0.89[AFR][1000 genomes]
rs28399138	0.94[AFR][1000 genomes]
rs6467234	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes]
rs6467236	0.92[AFR][1000 genomes]
rs6949882	0.94[AFR][1000 genomes]
rs6950279	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs6950496	0.90[AFR][1000 genomes]
rs6970267	0.97[AFR][1000 genomes]
rs71529418	0.88[AFR][1000 genomes]
rs71577870	0.88[AFR][1000 genomes]
rs9641847	0.82[ASW][hapmap]
rs9641848	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031284	chr7:128866118-128910506	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3349195	chr7:128887559-128918489	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128866000-128902200	Weak transcription	Gastric	stomach
2	chr7:128866200-128898600	Weak transcription	Thymus	Thymus
3	chr7:128866400-128891400	Weak transcription	Fetal Stomach	stomach
4	chr7:128866400-128899000	Weak transcription	Ovary	ovary
5	chr7:128866600-128901400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:128866800-128889600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr7:128867000-128898400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr7:128867200-128909800	Weak transcription	Primary B cells from cord blood	blood
9	chr7:128868600-128897200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:128872800-128892000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr7:128876400-128889800	Weak transcription	Fetal Intestine Small	intestine
12	chr7:128878800-128897000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr7:128880400-128889800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:128881000-128892000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:128881000-128898800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:128882000-128899600	Weak transcription	Left Ventricle	heart
17	chr7:128884800-128898800	Weak transcription	Primary T cells from cord blood	blood
18	chr7:128885000-128890000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:128885600-128898600	Weak transcription	Brain Germinal Matrix	brain
20	chr7:128886600-128889800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:128887200-128898600	Weak transcription	NHEK	skin
22	chr7:128887600-128892400	Weak transcription	Pancreas	Pancrea
23	chr7:128888000-128891800	Weak transcription	Brain Anterior Caudate	brain
24	chr7:128888200-128895800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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