Variant report

Variant	rs2898071
Chromosome Location	chr5:57181661-57181662
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11740778	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11744848	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12516650	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13169816	0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs13175128	0.84[AMR][1000 genomes]
rs34194290	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34269594	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34511346	0.92[ASN][1000 genomes]
rs34962616	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35602156	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57175000-57185200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:57176600-57183400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:57179200-57183600	Weak transcription	Fetal Heart	heart
4	chr5:57179800-57183200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:57179800-57184200	Weak transcription	Fetal Stomach	stomach
6	chr5:57180000-57183800	Weak transcription	Fetal Lung	lung
7	chr5:57180600-57185200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:57181400-57183200	Weak transcription	A549	lung
9	chr5:57181400-57184400	Enhancers	Brain Germinal Matrix	brain
10	chr5:57181400-57185200	Weak transcription	NHLF	lung
11	chr5:57181600-57182600	Weak transcription	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links