Variant report

Variant	rs34194290
Chromosome Location	chr3:132095124-132095125
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10461438	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10461639	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10487616	0.87[ASN][1000 genomes]
rs11740778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11744848	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12516650	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13156567	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13169816	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13175128	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13181681	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1972768	0.81[EUR][1000 genomes]
rs2898071	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34269594	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34275130	0.82[ASN][1000 genomes]
rs34511346	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34645667	0.82[ASN][1000 genomes]
rs34962616	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35497805	0.82[ASN][1000 genomes]
rs35602156	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35694981	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4323195	0.81[EUR][1000 genomes]
rs56029970	0.82[ASN][1000 genomes]
rs66639127	0.82[ASN][1000 genomes]
rs68023515	0.82[ASN][1000 genomes]
rs72751331	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011216	chr3:131876085-132630861	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv3339972	chr3:131943549-132556158	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv829728	chr3:132078561-132282622	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132040400-132095800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:132040600-132095800	Weak transcription	Lung	lung
3	chr3:132080400-132095800	Weak transcription	Gastric	stomach
4	chr3:132087000-132101800	Weak transcription	Esophagus	oesophagus
5	chr3:132087200-132095800	Weak transcription	Placenta	Placenta
6	chr3:132089800-132097800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr3:132090000-132097800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr3:132090200-132096000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr3:132095000-132095200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:132095000-132095400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr3:132095000-132095400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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